Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NAF16_RS14000 Genome accession   NZ_CP098021
Coordinates   2960806..2962329 (-) Length   507 a.a.
NCBI ID   WP_323694867.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2955806..2967329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS13975 (NAF16_13950) - 2956154..2956420 (+) 267 WP_020332578.1 DUF1040 family protein -
  NAF16_RS13980 (NAF16_13955) ccoG 2956682..2958106 (+) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  NAF16_RS13985 (NAF16_13960) - 2958151..2959137 (+) 987 WP_202640328.1 serine/threonine protein kinase -
  NAF16_RS13990 (NAF16_13965) - 2959168..2959767 (+) 600 WP_061057048.1 thiol:disulfide interchange protein DsbA/DsbL -
  NAF16_RS13995 (NAF16_13970) - 2959809..2960702 (-) 894 WP_020332582.1 acyltransferase -
  NAF16_RS14000 (NAF16_13975) comM 2960806..2962329 (-) 1524 WP_323694867.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NAF16_RS14005 (NAF16_13980) ilvG 2962813..2964459 (+) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  NAF16_RS14010 (NAF16_13985) ilvM 2964471..2964755 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  NAF16_RS14015 (NAF16_13990) ilvE 2964767..2965708 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55085.08 Da        Isoelectric Point: 8.2092

>NTDB_id=693568 NAF16_RS14000 WP_323694867.1 2960806..2962329(-) (comM) [Vibrio fluvialis strain V13]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDAHDAVVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=693568 NAF16_RS14000 WP_323694867.1 2960806..2962329(-) (comM) [Vibrio fluvialis strain V13]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATTGCGCTCGGTATTCTGGCTGCTTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGCC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTATGTGCCGACTTATGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCACGACGCCGTCGTGCCGCG
CGAACGCGATTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCGGCGGCGGGCAACCACAACC
TGTTGTTTCTCGGCCCGCCGGGCACGGGTAAAACTATGTTGGCATCGCGCCTGTGCGATCTGCTGCCAGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCACTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCTGCGCTGGTGGGTGGCGGCACCATTCCTCGTCCCGGAGAAATCTCACTTG
CTCACAATGGCCTGTTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTGCGCTATTTGAGTCGTTTATCCG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGTAGTGGCAAAGTGAATGC
GCTGCTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GTCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGTGCGCACCTGGCCGAAGCGCTCGGCTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.43