Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NAF16_RS12660 Genome accession   NZ_CP098021
Coordinates   2679222..2679752 (-) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain V13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2674222..2684752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS12640 (NAF16_12615) - 2674685..2674963 (-) 279 WP_172560579.1 MSHA biogenesis protein MshK -
  NAF16_RS12645 (NAF16_12620) - 2674989..2675639 (-) 651 WP_055453458.1 hypothetical protein -
  NAF16_RS12650 (NAF16_12625) - 2675636..2677084 (-) 1449 WP_323694828.1 MSHA biogenesis protein MshI -
  NAF16_RS12655 (NAF16_12630) csrD 2677092..2679086 (-) 1995 WP_158146910.1 RNase E specificity factor CsrD -
  NAF16_RS12660 (NAF16_12635) ssb 2679222..2679752 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  NAF16_RS12665 (NAF16_12640) qstR 2680035..2680685 (+) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  NAF16_RS12670 (NAF16_12645) galU 2680813..2681682 (+) 870 WP_104966215.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NAF16_RS12675 (NAF16_12650) uvrA 2681820..2684642 (+) 2823 WP_323694829.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=693564 NAF16_RS12660 WP_020332215.1 2679222..2679752(-) (ssb) [Vibrio fluvialis strain V13]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=693564 NAF16_RS12660 WP_020332215.1 2679222..2679752(-) (ssb) [Vibrio fluvialis strain V13]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTATATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGATGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAACAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489