Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NAF16_RS12665 Genome accession   NZ_CP098021
Coordinates   2680035..2680685 (+) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675035..2685685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS12650 (NAF16_12625) - 2675636..2677084 (-) 1449 WP_323694828.1 MSHA biogenesis protein MshI -
  NAF16_RS12655 (NAF16_12630) csrD 2677092..2679086 (-) 1995 WP_158146910.1 RNase E specificity factor CsrD -
  NAF16_RS12660 (NAF16_12635) ssb 2679222..2679752 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  NAF16_RS12665 (NAF16_12640) qstR 2680035..2680685 (+) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  NAF16_RS12670 (NAF16_12645) galU 2680813..2681682 (+) 870 WP_104966215.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NAF16_RS12675 (NAF16_12650) uvrA 2681820..2684642 (+) 2823 WP_323694829.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=693565 NAF16_RS12665 WP_024374534.1 2680035..2680685(+) (qstR) [Vibrio fluvialis strain V13]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=693565 NAF16_RS12665 WP_024374534.1 2680035..2680685(+) (qstR) [Vibrio fluvialis strain V13]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAACGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCTGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACTATCGAACTTACTACAAGGGAA
CTACAGATTTTGCGCAGTCTAAAAACAGGGGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAGTTTACCGT
AAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528