Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LQ939_RS18705 Genome accession   NZ_CP097983
Coordinates   4037660..4039180 (+) Length   506 a.a.
NCBI ID   WP_250651155.1    Uniprot ID   -
Organism   Pantoea alhagi strain NX-11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4032660..4044180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ939_RS18685 (LQ939_18660) ilvE 4034225..4035154 (-) 930 WP_085069423.1 branched-chain-amino-acid transaminase -
  LQ939_RS18690 (LQ939_18665) ilvM 4035173..4035430 (-) 258 WP_250651154.1 acetolactate synthase 2 small subunit -
  LQ939_RS18695 (LQ939_18670) ilvG 4035427..4037074 (-) 1648 Protein_3648 acetolactate synthase 2 catalytic subunit -
  LQ939_RS18700 (LQ939_18675) ilvL 4037224..4037322 (-) 99 WP_071883719.1 ilv operon leader peptide -
  LQ939_RS18705 (LQ939_18680) comM 4037660..4039180 (+) 1521 WP_250651155.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LQ939_RS18710 (LQ939_18685) - 4039244..4039582 (-) 339 WP_085069415.1 DUF413 domain-containing protein -
  LQ939_RS18715 (LQ939_18690) hdfR 4039704..4040531 (+) 828 WP_085069413.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54996.57 Da        Isoelectric Point: 8.0992

>NTDB_id=693520 LQ939_RS18705 WP_250651155.1 4037660..4039180(+) (comM) [Pantoea alhagi strain NX-11]
MSLSRVITRAALGVEAPLVTVEVHISRGLPGLSLVGLPEKTVKEARDRVRSAIINSGFDFPAKRVTVNLAPADLPKEGGR
FDLPIAVAILAASEQLPGVELAQFEFLGELALSGALRGVQGAIPAAMAAKEAGRRLILPAENAADVGLVQQGESLVAESL
MEICAFLLKQHSLSPGKAEEIANEEKSEDLCDIIGQQQGKRALEIAAAGGHNLLLIGPPGTGKTMLAMRLTGLLPPLTER
EALECAIIASIVKSGDVHKQWRRRPFRLPHHSSTLYALIGGGSIPQPGEITLAHNGVLFLDELPEFNRKTLDALREPLET
GEITISRARAKVTWPARFQLVAAMNPSPTGHYQGNHNRSTPQQTLCYLSRLSGPFLDRFDLSLEIPLLPPGMLSQPQKNA
EGSNEVRLRVLEARERQLARQGKVNALMSNAEVQQWCGLQQADAEWLESVLVKLGLSVRAWQRLLKVSRTIADLAGQERL
SRAHLLEALSYRGMDRMMAHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=693520 LQ939_RS18705 WP_250651155.1 4037660..4039180(+) (comM) [Pantoea alhagi strain NX-11]
ATGTCTTTATCCCGCGTTATTACACGTGCGGCCCTGGGCGTAGAAGCGCCGCTGGTGACGGTGGAAGTTCATATAAGTCG
TGGTCTACCCGGCCTTTCGCTGGTTGGGTTACCTGAAAAAACGGTGAAAGAAGCTCGCGACAGGGTGCGTAGCGCGATTA
TTAATAGCGGTTTTGATTTCCCGGCAAAGCGTGTCACGGTTAATCTGGCTCCTGCTGATTTGCCAAAAGAAGGCGGCCGC
TTTGATCTCCCCATTGCTGTTGCCATTCTTGCCGCTTCAGAGCAACTTCCTGGCGTAGAACTGGCCCAGTTTGAATTCCT
GGGAGAGCTGGCGCTTAGCGGTGCGCTCAGAGGCGTACAGGGCGCGATTCCCGCAGCAATGGCCGCCAAAGAAGCGGGCA
GAAGATTAATTTTGCCTGCTGAAAATGCTGCCGACGTGGGTTTGGTCCAACAGGGGGAATCACTGGTTGCTGAGAGCCTG
ATGGAGATCTGTGCTTTTCTCTTAAAGCAGCATTCTCTCTCACCAGGGAAAGCAGAGGAGATAGCTAACGAAGAGAAAAG
CGAGGACTTGTGCGATATCATCGGCCAACAGCAGGGAAAGCGAGCGCTGGAAATCGCCGCAGCAGGAGGACACAACCTAC
TGCTTATTGGCCCGCCGGGAACAGGAAAAACTATGCTGGCGATGCGGCTAACCGGGCTATTACCTCCCCTTACCGAACGT
GAAGCATTAGAGTGTGCCATTATTGCCAGTATCGTAAAAAGTGGCGATGTGCATAAACAATGGCGCAGGCGACCGTTTCG
GCTTCCCCATCATAGTTCAACGCTTTATGCGCTTATCGGCGGTGGTAGCATTCCGCAGCCCGGCGAAATTACCCTGGCAC
ATAACGGAGTACTGTTTCTGGATGAACTGCCCGAGTTCAATCGAAAAACGCTGGATGCGTTACGTGAGCCGTTAGAAACC
GGTGAAATTACCATTTCGCGCGCACGGGCCAAAGTCACCTGGCCTGCACGCTTTCAACTGGTTGCCGCAATGAATCCCAG
CCCAACCGGACATTATCAGGGCAATCATAATCGCAGCACGCCACAGCAAACACTGTGTTATCTCAGCCGCTTATCAGGGC
CCTTTCTTGATCGTTTCGACCTTTCTCTGGAGATACCGCTGTTGCCGCCAGGAATGTTAAGCCAGCCGCAAAAAAACGCC
GAGGGCAGTAATGAGGTCCGGTTACGGGTGCTGGAAGCGCGTGAACGCCAGCTGGCGCGTCAGGGCAAAGTGAATGCGTT
AATGAGCAATGCAGAAGTACAGCAATGGTGTGGGTTACAACAAGCCGATGCAGAATGGCTTGAGTCAGTATTGGTTAAAC
TGGGGCTTTCTGTCAGAGCCTGGCAACGCTTGTTAAAGGTTTCACGTACCATCGCTGATTTAGCAGGGCAAGAAAGGCTT
AGTCGTGCGCATCTGTTGGAAGCTTTAAGCTATCGCGGCATGGATCGTATGATGGCGCATTTGCATAAAAGCCTGGAATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.433

100

0.607
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio cholerae strain A1552

60.956

99.209

0.605
  comM Vibrio campbellii strain DS40M4

60.198

99.802

0.601
  comM Legionella pneumophila str. Paris

49.799

98.419

0.49
  comM Legionella pneumophila strain ERS1305867

49.799

98.419

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.447