Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NAE95_RS23195 Genome accession   NZ_CP097900
Coordinates   4927322..4928845 (+) Length   507 a.a.
NCBI ID   WP_323711953.1    Uniprot ID   -
Organism   Serratia marcescens strain Bup     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4922322..4933845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAE95_RS23170 (NAE95_23170) - 4922523..4923449 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  NAE95_RS23175 (NAE95_23175) ilvM 4923473..4923730 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  NAE95_RS23180 (NAE95_23180) ilvG 4923727..4925373 (-) 1647 WP_049209496.1 acetolactate synthase 2 catalytic subunit -
  NAE95_RS23185 (NAE95_23185) ilvL 4925516..4925614 (-) 99 WP_013814970.1 ilv operon leader peptide -
  NAE95_RS23190 (NAE95_23190) - 4925748..4926980 (-) 1233 WP_025304644.1 MFS transporter -
  NAE95_RS23195 (NAE95_23195) comM 4927322..4928845 (+) 1524 WP_323711953.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NAE95_RS23200 (NAE95_23200) - 4928873..4929211 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  NAE95_RS23205 (NAE95_23205) hdfR 4929331..4930158 (+) 828 WP_025304646.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54486.73 Da        Isoelectric Point: 7.9583

>NTDB_id=693497 NAE95_RS23195 WP_323711953.1 4927322..4928845(+) (comM) [Serratia marcescens strain Bup]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVTPPAAGNAYENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAIASLQHPVLSALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYHGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLETTLNALGLSVRAWQRILKVARTLADLAGDTE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=693497 NAE95_RS23195 WP_323711953.1 4927322..4928845(+) (comM) [Serratia marcescens strain Bup]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCACCGGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCGCACTGCGTGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GACAATTGATCCTGTCGACGGACAACGCCGCCGAGGTCGGCCTGATCGCACAGTCACAATCCCATACCGCCCAACACCTG
TTGGAGGTCTGTGCTTTTTTACTCGGCCAGGGCGAACTGCCGGTGGCCGTCACACCCCCCGCAGCCGGCAATGCGTACGA
AAACGCCGATCTGCGCGACATCATCGGCCAGGAGCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACAGGCAAAACCATGCTGGCCAGCCGACTGACGGGCTTACTGCCGCCGCTGACGGAG
CCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAACACCCTGTTCTTAGCGCTCTGCCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCATCACAGCGCATCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGTCCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTCGATGAGCTACCGGAATTCGAGCGTAAGGTCCTGGATGCGCTGCGCGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCTGCCAGAGTACAGTTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCATGGGTTGCACAACCGCGCCTCGCCGCAGCAGGTGTTGCGCTATCTGGCTCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGCCAGCGGAAAACGCAT
GGGGAAAGCAGTGAGCAGGTGCGGAAACGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGTGATTGTGTTCTGCAGGCGGCGGACGCCGAGTTTTTGGAGACGACATTAAACG
CGCTGGGGTTATCGGTACGCGCCTGGCAGCGCATCCTGAAAGTGGCTCGCACGCTGGCGGATTTGGCGGGAGATACTGAA
CTCGACAGGCGCCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGATCGTCTGTTGTTACAGCTACATCGCAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

65.538

99.014

0.649
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

50.905

98.028

0.499
  comM Legionella pneumophila strain ERS1305867

50.905

98.028

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.652

99.803

0.456