Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9782_RS19935 Genome accession   NZ_CP097896
Coordinates   4526489..4527031 (+) Length   180 a.a.
NCBI ID   WP_275071214.1    Uniprot ID   -
Organism   Pectobacterium actinidiae strain GX-Pa1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4521489..4532031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9782_RS19925 (M9782_19915) - 4522976..4523395 (-) 420 WP_275071213.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M9782_RS19930 (M9782_19920) uvrA 4523412..4526246 (-) 2835 WP_151241434.1 excinuclease ABC subunit UvrA -
  M9782_RS19935 (M9782_19925) ssb 4526489..4527031 (+) 543 WP_275071214.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M9782_RS19940 (M9782_19930) - 4527646..4529526 (+) 1881 WP_275071215.1 reverse transcriptase domain-containing protein -
  M9782_RS19945 (M9782_19935) - 4529812..4530198 (-) 387 WP_275071216.1 winged helix-turn-helix transcriptional regulator -
  M9782_RS19950 (M9782_19940) - 4530311..4531360 (+) 1050 WP_275071217.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19118.08 Da        Isoelectric Point: 5.2456

>NTDB_id=693464 M9782_RS19935 WP_275071214.1 4526489..4527031(+) (ssb) [Pectobacterium actinidiae strain GX-Pa1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQSGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQNGTSFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=693464 M9782_RS19935 WP_275071214.1 4526489..4527031(+) (ssb) [Pectobacterium actinidiae strain GX-Pa1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGTCTGGCGTAGAGCGTTACACCACCGAAGTGGTTGTTAACGTCGG
CGGCACGATGCAGATGTTAGGTGGACGCCAGGGTGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GTGGCTGGGGTCAACCTCAACAGCCTCAGAACGGCACCTCGTTCAGCGGCGGTGCGCAAGCTCAGCAGCGCCCAGCTCAG
AACAGCGCGCCTGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.756
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.578
  ssb Neisseria gonorrhoeae MS11

46.629

98.889

0.461
  ssb Neisseria meningitidis MC58

46.629

98.889

0.461
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.222

100

0.372