Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M9782_RS00870 Genome accession   NZ_CP097896
Coordinates   205526..207052 (+) Length   508 a.a.
NCBI ID   WP_275071443.1    Uniprot ID   -
Organism   Pectobacterium actinidiae strain GX-Pa1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 200526..212052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9782_RS00850 (M9782_00850) - 201963..202889 (-) 927 WP_039363283.1 branched-chain amino acid transaminase -
  M9782_RS00855 (M9782_00855) ilvM 202915..203175 (-) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  M9782_RS00860 (M9782_00860) ilvG 203233..204879 (-) 1647 WP_275071442.1 acetolactate synthase 2 catalytic subunit -
  M9782_RS00865 (M9782_00865) ilvL 205020..205118 (-) 99 WP_071531109.1 ilv operon leader peptide -
  M9782_RS00870 (M9782_00870) comM 205526..207052 (+) 1527 WP_275071443.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M9782_RS00875 (M9782_00875) - 207114..207452 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  M9782_RS00880 (M9782_00880) hdfR 207573..208400 (+) 828 WP_039364351.1 HTH-type transcriptional regulator HdfR -
  M9782_RS00885 (M9782_00885) yjfF 208422..209384 (-) 963 WP_275071444.1 galactofuranose ABC transporter, permease protein YjfF -
  M9782_RS00890 (M9782_00890) ytfT 209384..210394 (-) 1011 WP_338117876.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  M9782_RS00895 (M9782_00895) ytfR 210381..211901 (-) 1521 WP_275071445.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55463.97 Da        Isoelectric Point: 6.5676

>NTDB_id=693445 M9782_RS00870 WP_275071443.1 205526..207052(+) (comM) [Pectobacterium actinidiae strain GX-Pa1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMALIPQGEALMAGHL
LDVCAFLSGEEELLSCSDITPTTQSEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=693445 M9782_RS00870 WP_275071443.1 205526..207052(+) (comM) [Pectobacterium actinidiae strain GX-Pa1]
ATGTCATTGGCAGTTACCTATACTCGGGCGATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACACTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAACGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATTGATGGTGAAAAGCTCAGCCGTTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCAATTCCCGCCGCATTGGAAGCCATAAAATCAGGCC
GCCAGCTTATCCTGCCAGATGATAATAAACGGGAGATGGCGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTAGATGTGTGCGCGTTTCTCAGCGGGGAAGAAGAGTTGCTCAGTTGCTCTGACATCACACCGACCACGCAGTCAGAAGA
AGATACGCTCGACTTGAAGGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCGGGCGGTCACA
ACCTGCTCTTGTTAGGGCCACCAGGAACAGGGAAAACTATGCTGGCGAGTCGATTAGGCAATCTGATGCCCCCACTAAGC
GATGAGGAAGCCCTGGAAAGCGCCGCCATTAACAGCCTCATCAACATTGATGCCACCATGACTCGCTGGCGAGCCAGACC
GTTCAGAGCACCGCATCATAGTTCTTCCATGGCTGCACTCGTGGGCGGAGGGTCGCTACCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGCGTACTGTTTCTGGATGAACTACCGGAGTTTGAACGGCGCGTTCTGGACTCGCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATCTCTCGCACGCGGGCCAAAGTATGTTACCCAGCACGCGTGCAGCTCGTTGCCGCAATGAA
TCCCAGTCCATCAGGACACTATCAGGGCATTCATAATCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CGGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTGCCACCAGGGGTCTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGACAGCACGGCAAATACAGCTGAAACGAGCAAATAAAATCAA
TGCACTACTCACTTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGACGCCGCCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGCGCATGGCATAGGATATTGAAAGTCGCACGCACGATCGCTGATCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATAGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Vibrio cholerae strain A1552

64.414

99.016

0.638
  comM Glaesserella parasuis strain SC1401

62.919

99.803

0.628
  comM Vibrio campbellii strain DS40M4

62.846

99.606

0.626
  comM Legionella pneumophila str. Paris

50.704

97.835

0.496
  comM Legionella pneumophila strain ERS1305867

50.704

97.835

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.943

99.803

0.469