NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	CKCBHOJB_RS02275	Genome accession	NZ_CP097870
Coordinates	518565..520067 (+)	Length	500 a.a.
NCBI ID	WP_281050421.1	Uniprot ID	-
Organism	Thauera sp. GDN1
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 513565..525067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CKCBHOJB_RS02240 (CKCBHOJB_00449)	-	513606..514379 (-)	774	WP_281050414.1	DUF4239 domain-containing protein	-
CKCBHOJB_RS02245 (CKCBHOJB_00450)	-	514559..515050 (+)	492	WP_281050415.1	thioesterase family protein	-
CKCBHOJB_RS02250 (CKCBHOJB_00451)	-	515058..515432 (+)	375	WP_281050416.1	cupin domain-containing protein	-
CKCBHOJB_RS02255 (CKCBHOJB_00452)	amt	515496..516827 (-)	1332	WP_281050417.1	ammonium transporter	-
CKCBHOJB_RS02260 (CKCBHOJB_00453)	glnK	516842..517180 (-)	339	WP_281050418.1	P-II family nitrogen regulator	-
CKCBHOJB_RS02265 (CKCBHOJB_00454)	-	517208..517915 (-)	708	WP_281050419.1	TorF family putative porin	-
CKCBHOJB_RS02270 (CKCBHOJB_00455)	-	518178..518429 (+)	252	WP_281050420.1	accessory factor UbiK family protein	-
CKCBHOJB_RS02275 (CKCBHOJB_00456)	comM	518565..520067 (+)	1503	WP_281050421.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
CKCBHOJB_RS02280 (CKCBHOJB_00457)	-	520123..521319 (+)	1197	WP_281050422.1	multidrug effflux MFS transporter	-
CKCBHOJB_RS02285 (CKCBHOJB_00458)	-	521338..521730 (-)	393	WP_281050423.1	rhodanese-like domain-containing protein	-
CKCBHOJB_RS02290 (CKCBHOJB_00459)	-	521966..522805 (+)	840	WP_281050424.1	ABC transporter ATP-binding protein	-
CKCBHOJB_RS02295 (CKCBHOJB_00460)	-	522805..523509 (+)	705	WP_281050425.1	ABC transporter ATP-binding protein	-
CKCBHOJB_RS02300 (CKCBHOJB_00461)	-	523525..524394 (+)	870	WP_281050426.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 500 a.a. Molecular weight: 52649.50 Da Isoelectric Point: 8.5223

                                >NTDB_id=693163 CKCBHOJB_RS02275 WP_281050421.1 518565..520067(+) (comM) [Thauera sp. GDN1]

MSLALVRARALEGLAAPEVTVEVHLANGLPAFSLVGLPDTEVREARDRVRAAIQSSQFEFPQRRITVNLAPADLPKEGGR

FDLAIAVGILAASGQVAMARIDGLEFCGELSLTGDLRPVRGVLAAALAATRGGRGLVFPQGNAAEAALARRAQALPAASL

LAVCAHLNGHTALEPLAEAGPPPAPEAGVPDLADVRGQLQARRALEVAAAAGHSLLLFGSPGTGKSMLAQRLPGVLPPMS

EEEAIEAAAVASIEGGFDLRAWGRRPFRAPHHSASAAALVGGGAVPRPGEISLAHRGVLFLDELPEFDRRVLESLREPLE

TGTITVSRARRRAEFPARFQLVAAMNPCPCGHHGDPLRACRCTPDQIARYRARLSGPLLDRIDLVVEVPALSPEALVQAP

AGEASAVVRERVQAARAVQLARQGCTNAELPAGEVERHCLPDAGGETLLRQAMQRLKLSARAYHRVLRVARTLADLAGAG

RPAAAHIAEAIQYRRTLDRG

Nucleotide

Download Length: 1503 bp

                                >NTDB_id=693163 CKCBHOJB_RS02275 WP_281050421.1 518565..520067(+) (comM) [Thauera sp. GDN1]

ATGTCGCTCGCGCTCGTGCGCGCCCGTGCGCTGGAAGGGCTGGCTGCGCCCGAGGTCACCGTCGAAGTCCATCTTGCCAA

CGGCCTGCCGGCCTTCAGCCTGGTCGGCCTGCCCGACACCGAGGTGCGCGAGGCGCGCGACCGCGTGCGGGCGGCGATCC

AGTCCTCGCAGTTCGAGTTTCCCCAGCGCCGGATCACGGTCAATCTCGCCCCCGCCGACCTGCCCAAGGAGGGCGGGCGC

TTCGACCTCGCGATCGCGGTCGGCATCCTGGCCGCGTCCGGCCAGGTGGCGATGGCGCGCATCGACGGGCTGGAGTTCTG

CGGCGAGCTGTCGCTGACCGGCGACCTGCGCCCGGTACGCGGGGTGCTGGCTGCGGCCCTGGCGGCGACGCGGGGCGGGC

GCGGCCTGGTCTTTCCGCAGGGCAATGCGGCCGAGGCGGCGCTGGCGCGGCGGGCGCAGGCGCTGCCGGCCGCCAGCCTG

CTCGCGGTGTGCGCGCATCTGAACGGCCACACCGCGCTCGAACCGCTGGCCGAGGCCGGCCCGCCACCCGCGCCGGAGGC

GGGCGTCCCCGACCTCGCCGACGTGCGCGGGCAACTGCAGGCGCGGCGCGCGCTGGAGGTCGCCGCCGCTGCAGGGCATT

CGCTGCTGCTCTTCGGGTCGCCGGGTACCGGCAAGTCGATGCTGGCGCAGCGCCTGCCGGGCGTGCTGCCGCCGATGAGC

GAGGAGGAGGCGATCGAGGCCGCGGCGGTGGCCTCGATCGAGGGCGGTTTCGACCTGCGCGCCTGGGGGCGGCGCCCATT

CCGCGCGCCGCACCACTCGGCTTCGGCGGCCGCGCTGGTGGGCGGCGGCGCGGTACCCCGGCCCGGCGAGATCTCGCTGG

CGCACCGCGGCGTGCTGTTCCTCGACGAACTGCCCGAATTCGACCGTCGCGTGCTCGAGTCCCTGCGCGAGCCGCTGGAG

ACCGGCACCATCACCGTGTCGCGCGCGCGCCGGCGGGCGGAATTCCCCGCGCGCTTCCAGCTCGTCGCGGCGATGAATCC

CTGCCCCTGCGGCCACCATGGCGATCCGCTGCGCGCCTGCCGGTGCACGCCCGACCAGATCGCGCGCTACCGCGCCCGCC

TGTCGGGGCCGCTGCTCGACCGCATCGACCTGGTGGTCGAGGTTCCGGCGCTCTCCCCCGAAGCCCTGGTGCAGGCGCCG

GCGGGCGAGGCCTCGGCGGTGGTGCGGGAGCGGGTGCAGGCCGCGCGTGCGGTGCAGCTCGCACGCCAGGGCTGCACCAA

CGCCGAGCTGCCCGCGGGCGAGGTCGAGCGCCACTGCCTGCCCGATGCGGGCGGCGAAACCCTGCTGCGCCAGGCCATGC

AGCGGCTGAAGCTGTCGGCGAGGGCGTATCATCGCGTGCTCCGAGTGGCGCGCACGCTGGCCGACCTGGCCGGCGCCGGG

CGCCCCGCCGCGGCGCACATCGCCGAGGCCATCCAGTATCGCCGCACCCTCGACCGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	54.89	100	0.55
comM	Vibrio cholerae strain A1552	54.89	100	0.55
comM	Haemophilus influenzae Rd KW20	53.2	100	0.532
comM	Glaesserella parasuis strain SC1401	50.988	100	0.516
comM	Legionella pneumophila str. Paris	50.198	100	0.506
comM	Legionella pneumophila strain ERS1305867	50.198	100	0.506
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.811	100	0.446

Detailed information NTG0693163