Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   EP180_RS11175 Genome accession   NZ_AP018385
Coordinates   1894783..1895970 (-) Length   395 a.a.
NCBI ID   WP_003690292.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC498     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1889783..1900970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP180_RS11155 (NgFC498_01953) - 1890115..1890942 (-) 828 WP_164717020.1 opacity family porin -
  EP180_RS11160 (NgFC498_01954) - 1891029..1891825 (-) 797 Protein_1917 IS1595 family transposase -
  EP180_RS11165 (NgFC498_01955) topA 1891912..1894218 (-) 2307 WP_103195289.1 type I DNA topoisomerase -
  EP180_RS11170 (NgFC498_01956) - 1894296..1894757 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  EP180_RS11175 (NgFC498_01957) dprA 1894783..1895970 (-) 1188 WP_003690292.1 DNA-processing protein DprA Machinery gene
  EP180_RS11180 (NgFC498_01958) - 1896061..1897338 (-) 1278 WP_003690124.1 sigma-54-dependent transcriptional regulator -
  EP180_RS11185 (NgFC498_01959) - 1897331..1899451 (-) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  EP180_RS11190 (NgFC498_01960) - 1899451..1900050 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41880.98 Da        Isoelectric Point: 6.3096

>NTDB_id=69283 EP180_RS11175 WP_003690292.1 1894783..1895970(-) (dprA) [Neisseria gonorrhoeae strain FC498]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=69283 EP180_RS11175 WP_003690292.1 1894783..1895970(-) (dprA) [Neisseria gonorrhoeae strain FC498]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.747

100

0.997

  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

90.176

100

0.906

  dprA Neisseria meningitidis MC58

90.176

100

0.906

  dprA Vibrio cholerae strain A1552

37.28

100

0.375


Multiple sequence alignment