Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M9414_RS02620 Genome accession   NZ_CP097795
Coordinates   558065..559276 (+) Length   403 a.a.
NCBI ID   WP_250269514.1    Uniprot ID   -
Organism   Pasteurella multocida strain 34030     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553065..564276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9414_RS02595 (M9414_02595) - 553538..554332 (-) 795 WP_115097853.1 sulfite exporter TauE/SafE family protein -
  M9414_RS02600 (M9414_02600) rppH 554335..554931 (-) 597 WP_115097852.1 RNA pyrophosphohydrolase -
  M9414_RS02605 (M9414_02605) ampD 555517..556083 (-) 567 WP_104227618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M9414_RS02610 (M9414_02610) pilA 556243..556677 (+) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  M9414_RS02615 (M9414_02615) pilB 556677..558065 (+) 1389 WP_250269424.1 GspE/PulE family protein Machinery gene
  M9414_RS02620 (M9414_02620) pilC 558065..559276 (+) 1212 WP_250269514.1 type II secretion system F family protein Machinery gene
  M9414_RS02625 (M9414_02625) - 559276..560001 (+) 726 WP_250269425.1 A24 family peptidase -
  M9414_RS02630 (M9414_02630) coaE 560013..560633 (+) 621 WP_104227613.1 dephospho-CoA kinase -
  M9414_RS02635 (M9414_02635) yacG 560644..560847 (+) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  M9414_RS02640 (M9414_02640) - 560847..561116 (+) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  M9414_RS02645 (M9414_02645) - 561565..562938 (+) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  M9414_RS02650 (M9414_02650) raiA 563183..563500 (+) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46125.20 Da        Isoelectric Point: 9.9610

>NTDB_id=692596 M9414_RS02620 WP_250269514.1 558065..559276(+) (pilC) [Pasteurella multocida strain 34030]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALRTFLPTQKSGIAKHVLTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYKQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=692596 M9414_RS02620 WP_250269514.1 558065..559276(+) (pilC) [Pasteurella multocida strain 34030]
ATGAAAAAATTAAAAATGTTTCGCTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATCTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCGGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGTGCTTACCGAGATGCGACTTGCTGAGGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATAAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.148

100

0.484
  pilC Haemophilus influenzae 86-028NP

47.901

100

0.481
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395