Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M9O75_RS22905 Genome accession   NZ_CP097724
Coordinates   4733542..4735062 (+) Length   506 a.a.
NCBI ID   WP_267326331.1    Uniprot ID   -
Organism   Escherichia coli strain MS1494     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4728542..4740062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O75_RS22880 (M9O75_22880) ilvE 4730096..4731025 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  M9O75_RS22885 (M9O75_22885) ilvM 4731045..4731308 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  M9O75_RS22890 (M9O75_22890) ilvG 4731305..4732951 (-) 1647 WP_001012593.1 acetolactate synthase 2 catalytic subunit -
  M9O75_RS22895 (M9O75_22895) ilvX 4732954..4733004 (-) 51 WP_001387183.1 peptide IlvX -
  M9O75_RS22900 (M9O75_22900) ilvL 4733091..4733189 (-) 99 WP_001311244.1 ilv operon leader peptide -
  M9O75_RS22905 (M9O75_22905) comM 4733542..4735062 (+) 1521 WP_267326331.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M9O75_RS22910 (M9O75_22910) maoP 4735087..4735425 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  M9O75_RS22915 (M9O75_22915) hdfR 4735544..4736383 (+) 840 WP_000379257.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55291.46 Da        Isoelectric Point: 7.4104

>NTDB_id=691929 M9O75_RS22905 WP_267326331.1 4733542..4735062(+) (comM) [Escherichia coli strain MS1494]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALEHPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLLGPFLDRFDLSLEIPLPPPGILSKTVVPG
ENSTTVKQRVMAARERQFKRQNKLNAWLDNPEIRQFCKLESEDAQWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=691929 M9O75_RS22905 WP_267326331.1 4733542..4735062(+) (comM) [Escherichia coli strain MS1494]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCAGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTGCCTATCGCTATTGCGTTACTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGCGCGTTTCTGGAAGGTAAGCACGCTCTCGAACACCCGAAACCAACTAATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTTTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCAATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAACAGACATTACGTTATCTCAACCGGCTCTTGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAACAGCACCACCGTTAAACAACGTGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAACGCCTG
GCTGGATAATCCGGAAATACGCCAATTCTGCAAGCTTGAAAGCGAAGATGCGCAGTGGCTGGAAGAAACGCTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

47.59

98.419

0.468
  comM Legionella pneumophila strain ERS1305867

47.59

98.419

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439