Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MW290_RS31170 Genome accession   NZ_CP097636
Coordinates   3619836..3621362 (+) Length   508 a.a.
NCBI ID   WP_250198207.1    Uniprot ID   -
Organism   Aquincola tertiaricarbonis strain RN12     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3614836..3626362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW290_RS31155 (MW290_31150) - 3616434..3617402 (+) 969 WP_250194039.1 IS110 family transposase -
  MW290_RS31160 (MW290_31155) - 3617592..3619121 (-) 1530 WP_250198206.1 ammonium transporter -
  MW290_RS31165 (MW290_31160) - 3619143..3619481 (-) 339 WP_046113293.1 P-II family nitrogen regulator -
  MW290_RS31170 (MW290_31165) comM 3619836..3621362 (+) 1527 WP_250198207.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MW290_RS31175 (MW290_31170) - 3621373..3622617 (-) 1245 WP_250198208.1 cytochrome-c peroxidase -
  MW290_RS31180 (MW290_31175) acpA 3622827..3624524 (+) 1698 WP_250198209.1 acid phosphatase -
  MW290_RS31185 (MW290_31180) - 3624569..3626098 (-) 1530 WP_250198210.1 DUF1501 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52966.81 Da        Isoelectric Point: 7.5696

>NTDB_id=691378 MW290_RS31170 WP_250198207.1 3619836..3621362(+) (comM) [Aquincola tertiaricarbonis strain RN12]
MTLAIVASRALDGLEAPAVQVEVHLANGLPAFNLVGLADTEVKEARERVRAALAHSGLGFPHNKRITVSLAPADLPKESG
RFDLPIALGILAANEQLDAAKLARHEYAGELSLAGELRPVRGAVALAYAARRAGASRSLVLPEGSASQAALVDGVAVYGA
RHLMDVVSALQPGDDAPPLARAAAPEHPPAPPGPDLRDVRGQAAVKRVLEVAAAGGHSLLMVGAPGTGKSMLAQRLPGLL
PPMAEEEALATAAIASLGRNGFDLAQWRQRPVRAPHHSASAAALVGGGSPPRPGEISLAHGGVLFLDELPEFPRHALEAL
REPLETGQVTLSRAARQATYPARFQLVAAMNPCPCGFLGAPAGHLRACRCTPEQIARYQGRLSGPLLDRIDLQVDVPAIP
PAQLMQAPEGEPSAVVAARVAAARERQQARQGCINADLGPAEVPLHCVPDATASTLLQRAAERLGWSGRGLHRTLRVART
LADLAGADTIGMTEMAEALQYRMAVIGH

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=691378 MW290_RS31170 WP_250198207.1 3619836..3621362(+) (comM) [Aquincola tertiaricarbonis strain RN12]
ATGACGCTGGCGATCGTTGCGAGCCGCGCGCTCGACGGGCTGGAAGCTCCCGCGGTGCAGGTGGAGGTGCACCTGGCCAA
TGGCCTGCCGGCCTTCAACCTGGTGGGCCTGGCCGACACCGAAGTCAAGGAAGCGCGCGAGCGGGTGCGCGCCGCTTTGG
CGCACAGCGGACTGGGCTTCCCGCACAACAAGCGCATCACCGTGAGCCTGGCGCCGGCCGACCTGCCCAAGGAATCCGGC
CGCTTCGATCTGCCGATCGCGCTGGGCATCCTGGCCGCCAACGAGCAGCTGGATGCGGCCAAGCTCGCGCGCCACGAGTA
CGCGGGTGAGCTGTCGCTGGCCGGCGAGCTGCGGCCGGTGCGCGGCGCCGTGGCGCTGGCTTATGCCGCCCGCCGCGCCG
GTGCCAGCCGCTCGCTGGTGCTGCCCGAAGGCAGCGCCAGCCAGGCCGCCCTGGTGGACGGCGTGGCGGTCTACGGTGCC
CGCCATCTGATGGACGTGGTGAGCGCCCTGCAGCCGGGCGACGACGCGCCGCCGCTGGCCCGCGCCGCCGCGCCCGAACA
CCCGCCTGCGCCACCCGGCCCCGACCTGCGCGACGTGCGCGGCCAGGCCGCCGTCAAGCGCGTGCTGGAGGTGGCGGCGG
CCGGCGGCCACAGCCTGCTGATGGTGGGCGCGCCCGGCACCGGCAAGTCGATGCTGGCGCAGCGCCTGCCCGGCCTGCTG
CCGCCGATGGCCGAAGAAGAGGCGCTGGCCACCGCAGCGATCGCCAGCCTGGGGCGCAACGGCTTCGACCTGGCGCAGTG
GCGCCAGCGCCCGGTACGCGCGCCGCACCACTCGGCCAGCGCGGCGGCGCTGGTGGGCGGCGGCTCGCCGCCGCGGCCGG
GCGAGATCTCGCTGGCGCACGGGGGCGTGCTCTTCCTCGATGAACTGCCCGAGTTCCCGCGCCATGCCCTGGAAGCCCTG
CGCGAGCCGCTGGAAACCGGCCAGGTCACGCTGTCGCGCGCGGCGCGCCAGGCCACCTACCCGGCGCGCTTCCAGCTGGT
GGCGGCCATGAACCCCTGCCCCTGCGGCTTTCTGGGCGCGCCGGCCGGGCACCTGCGCGCCTGCCGCTGCACGCCCGAGC
AGATAGCGCGTTACCAGGGCCGGCTGTCGGGGCCGCTGCTGGACCGCATCGACCTGCAGGTGGACGTGCCGGCCATCCCG
CCCGCGCAGTTGATGCAGGCGCCCGAAGGCGAGCCCAGCGCCGTGGTGGCCGCGCGCGTGGCTGCCGCGCGCGAACGGCA
GCAGGCCCGCCAGGGCTGCATCAACGCCGACCTGGGCCCGGCGGAGGTGCCGCTGCACTGCGTGCCCGACGCCACTGCCA
GCACCCTGCTGCAGCGCGCCGCCGAGCGGCTGGGCTGGTCGGGCCGCGGCCTGCACCGCACGCTGCGCGTGGCCCGCACG
CTGGCCGACCTGGCCGGCGCCGACACCATCGGCATGACCGAGATGGCCGAGGCGCTGCAGTACCGGATGGCGGTGATCGG
CCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.688

100

0.508
  comM Vibrio campbellii strain DS40M4

51.292

99.016

0.508
  comM Vibrio cholerae strain A1552

51.19

99.213

0.508
  comM Glaesserella parasuis strain SC1401

48.718

99.803

0.486
  comM Legionella pneumophila str. Paris

45.029

100

0.455
  comM Legionella pneumophila strain ERS1305867

45.029

100

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

99.803

0.427