Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M8853_RS08580 Genome accession   NZ_CP097616
Coordinates   1864575..1866104 (-) Length   509 a.a.
NCBI ID   WP_064973202.1    Uniprot ID   -
Organism   Pasteurella multocida strain P1702     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1859575..1871104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8853_RS08560 (M8853_08560) - 1860880..1861563 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  M8853_RS08565 (M8853_08565) envC 1861746..1862975 (+) 1230 WP_186256500.1 murein hydrolase activator EnvC -
  M8853_RS08570 (M8853_08570) - 1862972..1863814 (+) 843 WP_083042085.1 divergent polysaccharide deacetylase family protein -
  M8853_RS08575 (M8853_08575) - 1863835..1864521 (+) 687 WP_059245891.1 hypothetical protein -
  M8853_RS08580 (M8853_08580) comM 1864575..1866104 (-) 1530 WP_064973202.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M8853_RS08585 (M8853_08585) yihA 1866212..1866829 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M8853_RS08590 (M8853_08590) - 1866940..1867809 (+) 870 WP_064973201.1 VirK/YbjX family protein -
  M8853_RS08595 (M8853_08595) trmL 1867883..1868359 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  M8853_RS08600 (M8853_08600) - 1868517..1868843 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  M8853_RS08605 (M8853_08605) - 1868902..1869228 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  M8853_RS08610 (M8853_08610) - 1869283..1870803 (-) 1521 WP_064973200.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55992.43 Da        Isoelectric Point: 9.6874

>NTDB_id=691266 M8853_RS08580 WP_064973202.1 1864575..1866104(-) (comM) [Pasteurella multocida strain P1702]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSTM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=691266 M8853_RS08580 WP_064973202.1 1864575..1866104(-) (comM) [Pasteurella multocida strain P1702]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAGACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGAACTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATCGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGAGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGATTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACTATTGCAGACTTAAAT
AATGAACGCCAAATCCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TACGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.676

100

0.847
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.142

99.804

0.66
  comM Vibrio campbellii strain DS40M4

65.049

100

0.658
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47