Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M8848_RS08385 Genome accession   NZ_CP097608
Coordinates   1820716..1822245 (-) Length   509 a.a.
NCBI ID   WP_250193558.1    Uniprot ID   -
Organism   Pasteurella multocida strain 11205     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1815716..1827245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8848_RS08365 (M8848_08365) - 1817021..1817704 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  M8848_RS08370 (M8848_08370) envC 1817887..1819116 (+) 1230 WP_046333976.1 murein hydrolase activator EnvC -
  M8848_RS08375 (M8848_08375) - 1819113..1819955 (+) 843 WP_046333610.1 divergent polysaccharide deacetylase family protein -
  M8848_RS08380 (M8848_08380) - 1819976..1820662 (+) 687 WP_046333611.1 hypothetical protein -
  M8848_RS08385 (M8848_08385) comM 1820716..1822245 (-) 1530 WP_250193558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M8848_RS08390 (M8848_08390) yihA 1822353..1822970 (-) 618 WP_059245889.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M8848_RS08395 (M8848_08395) - 1823081..1823950 (+) 870 WP_014668443.1 VirK/YbjX family protein -
  M8848_RS08400 (M8848_08400) trmL 1824025..1824501 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  M8848_RS08405 (M8848_08405) - 1824647..1825654 (-) 1008 WP_046333613.1 hypothetical protein -
  M8848_RS08410 (M8848_08410) - 1825679..1827199 (-) 1521 WP_250191929.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55962.40 Da        Isoelectric Point: 9.6874

>NTDB_id=691159 M8848_RS08385 WP_250193558.1 1820716..1822245(-) (comM) [Pasteurella multocida strain 11205]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASAQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTSLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=691159 M8848_RS08385 WP_250193558.1 1820716..1822245(-) (comM) [Pasteurella multocida strain 11205]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCACCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAGACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGCTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCTCGTTACCTTTAGCCTCAGAACTGCCCACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGACCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCACTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCATTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCAGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.676

100

0.847
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

66.012

100

0.66
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.333

100

0.468