Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   STO1_RS05710 Genome accession   NZ_AP018338
Coordinates   1132644..1133600 (-) Length   318 a.a.
NCBI ID   WP_096422372.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127644..1138600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS05690 (STO1_011070) ftsW 1127689..1128912 (-) 1224 WP_000703351.1 cell division peptidoglycan polymerase FtsW -
  STO1_RS05695 (STO1_011080) prsA 1129099..1130040 (-) 942 WP_096422368.1 peptidylprolyl isomerase PrsA -
  STO1_RS05700 (STO1_011090) - 1130108..1130821 (-) 714 WP_096423000.1 O-methyltransferase -
  STO1_RS05705 (STO1_011100) pepF 1130823..1132625 (-) 1803 WP_096422370.1 oligoendopeptidase F Regulator
  STO1_RS05710 (STO1_011110) coiA 1132644..1133600 (-) 957 WP_096422372.1 competence protein CoiA Machinery gene
  STO1_RS05715 (STO1_011120) - 1133677..1134825 (-) 1149 WP_096422374.1 Card1-like endonuclease domain-containing protein -
  STO1_RS05720 (STO1_011130) tehB 1135003..1135863 (-) 861 WP_096422376.1 SAM-dependent methyltransferase TehB -
  STO1_RS05725 (STO1_011140) smpB 1135878..1136345 (-) 468 WP_084938555.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37750.20 Da        Isoelectric Point: 8.9568

>NTDB_id=69063 STO1_RS05710 WP_096422372.1 1132644..1133600(-) (coiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEVLYHWAKKDCQ
VALEYALPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YAWELDLKNQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLSCFAVVQDTTICHYIRQQLYYQTPYWM
KKQEETYQQGDNLLNRQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=69063 STO1_RS05710 WP_096422372.1 1132644..1133600(-) (coiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGTTTGTAGCTAGAGATGCCAAGGGAAATTTGGTGAATGCTCTCGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGGGGCGGACTACGATTACGCCAAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TTGCTATTTTCGAGAATGAAAGTCCAGAACACTTGGGAAATAAAGAGGTCCTTTATCACTGGGCCAAGAAAGACTGTCAG
GTTGCCCTAGAGTACGCTCTTCCTGAGATTCAGCAGATAGCAGATGTTCTCGTAAATGAGAAACTAGCTCTGGAGGTTCA
GTGTAGCCCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGCCAAGGATACCGTAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAACTGCAAAGGGGATTCCTCTATTTTAGTCAAAATATGGGTTTC
TATGCCTGGGAACTAGATCTCAAAAATCAAGTTCTGAGACTCAAATATCTTTTACATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTAAAGGAATTTCCCTATGGTCAAGGAAATCTCTTGGAAATTTTACGATTTCCTTATCAGAAACAAAAACTGT
CTTGTTTTGCAGTTGTGCAAGATACCACTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAACGCCTTACTGGATG
AAAAAGCAGGAGGAGACCTATCAGCAAGGGGATAATCTATTAAACCGTCAACTGGACGACTGGTATCCCCAAGTCAGACC
AATAGAATCGGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

71.069

100

0.711
  coiA Streptococcus pneumoniae D39

71.069

100

0.711
  coiA Streptococcus pneumoniae R6

71.069

100

0.711
  coiA Streptococcus mitis NCTC 12261

71.069

100

0.711
  coiA Streptococcus pneumoniae TIGR4

70.755

100

0.708
  coiA Lactococcus lactis subsp. cremoris KW2

41.846

100

0.428

Multiple sequence alignment