Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STO1_RS01635 Genome accession   NZ_AP018338
Coordinates   319752..321719 (+) Length   655 a.a.
NCBI ID   WP_096421668.1    Uniprot ID   A0A224A3Z8
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 314752..326719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS01620 (STO1_003160) - 315170..316201 (+) 1032 WP_096421663.1 sensor histidine kinase -
  STO1_RS01625 (STO1_003170) - 316336..317820 (-) 1485 WP_000743592.1 DUF1846 domain-containing protein -
  STO1_RS01630 (STO1_003180) - 317973..319583 (+) 1611 WP_096421665.1 glycoside hydrolase family 13 protein -
  STO1_RS01635 (STO1_003190) amiA 319752..321719 (+) 1968 WP_096421668.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS01640 (STO1_003200) amiA3 321866..323827 (+) 1962 WP_096421670.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS01645 (STO1_003210) - 324013..325458 (+) 1446 WP_096421672.1 LCP family protein -
  STO1_RS01650 (STO1_003220) cps4B 325460..326191 (+) 732 WP_096421674.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72477.99 Da        Isoelectric Point: 5.0689

>NTDB_id=69041 STO1_RS01635 WP_096421668.1 319752..321719(+) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKSKKWLLGAGAILSAALLFTACGKSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQGKGVTFPIHLDVPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=69041 STO1_RS01635 WP_096421668.1 319752..321719(+) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTATTTTGAGTGCGGCCCTTCTTTTTACTGCTTGTGGGAAAAGTGA
AAAGAAGGCTGATGCGCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGATTATAGTGTGACGAGCA
AGAGTTCAACTTCTGATGTTATAGCGAACGTTGTCGATGGCCTTTTGGAAAATGATAAGTATGGAAACTTAATTCCATCG
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGCTTGACTTATACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGAGGGAGAAGAGTATGCTGAAGTCAAGGCTCAGGATTTTGTTACTGGTCTAAAACACGCAGCTGACGGTAAATCAGACG
GCTTATCTCTCCTTCAAGATTCTATCAAAGGCTTGGCTGCCTACATCAGTGGAGAAAGCAATGACTTTTCTACTGTAGGA
GTGAAAGCTGTTGACGATTACACGGTTGAATATACGCTTAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACACCATCAAGTATTCTTT
ATAACGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCCCGACTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGAGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCTAAAACA
GACGAGGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTTAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTACACGGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTTGGTGAAAAGACCTTTGGAGAGTTGGCGCAGGCAGAGCTTGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGAAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCTGCCTTTGCTAAAGCAAAGGAAGAATTGCAGGG
AAAGGGAGTTACCTTCCCAATTCATTTGGATGTTCCAGTTGAACAGACTGATGTCATTGCCGTTCAACAGACGAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAAATG
AGCATTACGTCTCAAGCCAAGGTGCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCCAAGAAGGGATCGGCCCTTAAACACTTGGGAATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAT
AAGCGTTATGAAAAATACGCCAAAGCTCAAGCTTGGGTGTCTGATAGCTCGCTCTTGATTCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCTTACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A224A3Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment