Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STO1_RS01640 Genome accession   NZ_AP018338
Coordinates   321866..323827 (+) Length   653 a.a.
NCBI ID   WP_096421670.1    Uniprot ID   A0A224A5C1
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 316866..328827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS01630 (STO1_003180) - 317973..319583 (+) 1611 WP_096421665.1 glycoside hydrolase family 13 protein -
  STO1_RS01635 (STO1_003190) amiA 319752..321719 (+) 1968 WP_096421668.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS01640 (STO1_003200) amiA3 321866..323827 (+) 1962 WP_096421670.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS01645 (STO1_003210) - 324013..325458 (+) 1446 WP_096421672.1 LCP family protein -
  STO1_RS01650 (STO1_003220) cps4B 325460..326191 (+) 732 WP_096421674.1 capsular polysaccharide biosynthesis protein Cps4B -
  STO1_RS01655 (STO1_003230) cpsC 326200..326892 (+) 693 WP_084939336.1 capsular polysaccharide biosynthesis protein CpsC -
  STO1_RS01660 (STO1_003240) - 326902..327594 (+) 693 WP_096421676.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73039.39 Da        Isoelectric Point: 4.8745

>NTDB_id=69042 STO1_RS01640 WP_096421670.1 321866..323827(+) (amiA3) [Streptococcus oralis subsp. tigurinus strain osk_001]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLIDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGIK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFENGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKITD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLSSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKGPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=69042 STO1_RS01640 WP_096421670.1 321866..323827(+) (amiA3) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGATCAAAATGAAAAAAAGACTAATTGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCGGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCGACAACTTTTAACTATCTTATAGATTATTATGCGG
ATAACACTGCCGTTATTACCAATCTCGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCTGACAACAAGGGGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACTAATGACTTTTCAACTGTTGGTATCAAA
GCTTTGGACGACTATACGGTTGAGTACACTTTGACACGACCAGAACCTTATTGGAACTCTAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATTCTTTATAACG
GCCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACATTATTATGACCATGACAAA
GTAACCATTGAAAAAGTTAAGTTAGCCTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAATGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTTTATA
GCTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAATAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTTCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GACGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCAGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTTCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCAGTTAAAC
AAACCCTTGAAACAGTACTAAGTTCAGACAATATCGTCATTGATGTTCAACAACTTTCTACAGATGACTTTGGAAATGTT
GCATTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACCGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAAC
TTATTAAGAGTCTAGGGTTAGATACCTATACACAACTCCTGAAAGAAGCAGATGCCGAGAACAAAGATGTCGCTAAGCGT
TATGAAAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACTAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTAGGTATCAAGGGTGACGGAAATAATTACAAGTACA
TGAGATTGCAAAAAGGCCCTGTTACCAAGAAACAATTTGATGAAGCCAAGGCTAAGTGGGAAGCAGAAAGTAAAAAGGCT
ATCGAAAAGAGTCAAAAAGAATTTGAAAACCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A224A5C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.142

100

0.515
  amiA3 Streptococcus thermophilus LMG 18311

50.989

100

0.513
  amiA Streptococcus salivarius strain HSISS4

50.305

100

0.505

Multiple sequence alignment