Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M8333_RS27545 Genome accession   NZ_CP097554
Coordinates   5849365..5850885 (+) Length   506 a.a.
NCBI ID   WP_025108421.1    Uniprot ID   A0A0J2H2L0
Organism   Klebsiella michiganensis strain YZUMF202001     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5844365..5855885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8333_RS27525 (M8333_27520) - 5845930..5846859 (-) 930 WP_004097473.1 branched-chain amino acid transaminase -
  M8333_RS27530 (M8333_27525) ilvM 5846876..5847133 (-) 258 WP_004097471.1 acetolactate synthase 2 small subunit -
  M8333_RS27535 (M8333_27530) ilvG 5847130..5848776 (-) 1647 WP_025108420.1 acetolactate synthase 2 catalytic subunit -
  M8333_RS27540 (M8333_27535) ilvL 5848916..5849014 (-) 99 WP_001311244.1 ilv operon leader peptide -
  M8333_RS27545 (M8333_27540) comM 5849365..5850885 (+) 1521 WP_025108421.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M8333_RS27550 (M8333_27545) - 5850909..5851247 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  M8333_RS27555 (M8333_27550) hdfR 5851366..5852187 (+) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55211.68 Da        Isoelectric Point: 8.3570

>NTDB_id=689997 M8333_RS27545 WP_025108421.1 5849365..5850885(+) (comM) [Klebsiella michiganensis strain YZUMF202001]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHTLANPLPEGEYSDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=689997 M8333_RS27545 WP_025108421.1 5849365..5850885(+) (comM) [Klebsiella michiganensis strain YZUMF202001]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGTTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTACCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCCCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGGGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAAGATTGTTATCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGACATACCCTGGCTAACCCCCTTCCAGAAGGGGAATATTCGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAGCGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGCACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCGATGAATCCCAG
CCCGACAGGACACTATCAGGGCCAGCATAATCGCGCTTCACCGGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCGCTTCCGCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGACGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGTCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTTTCCCGAACTATTGCCGATATTGAGGCAGTCGAACGCATC
GAACGTCATCATTTGCAGGAGGCTCTCGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2H2L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.1

100

0.597
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

48.185

98.024

0.472
  comM Legionella pneumophila strain ERS1305867

48.185

98.024

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.443