Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LNQ82_RS04380 Genome accession   NZ_CP097501
Coordinates   886040..887203 (+) Length   387 a.a.
NCBI ID   WP_027022409.1    Uniprot ID   A0AAE9L106
Organism   Conchiformibius steedae DSM 2580     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 881040..892203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ82_RS04355 (LNQ82_04355) - 881386..881910 (+) 525 WP_027022404.1 PepSY domain-containing protein -
  LNQ82_RS04360 (LNQ82_04360) - 881988..882680 (+) 693 WP_027022405.1 response regulator -
  LNQ82_RS04365 (LNQ82_04365) - 882778..884118 (+) 1341 WP_027022406.1 ATP-binding protein -
  LNQ82_RS04370 (LNQ82_04370) - 884111..884737 (-) 627 WP_027022407.1 esterase/lipase family protein -
  LNQ82_RS04375 (LNQ82_04375) rnhB 884734..885333 (-) 600 WP_156932321.1 ribonuclease HII -
  LNQ82_RS04380 (LNQ82_04380) dprA 886040..887203 (+) 1164 WP_027022409.1 DNA-processing protein DprA Machinery gene
  LNQ82_RS04385 (LNQ82_04385) - 887270..887989 (-) 720 WP_027022410.1 hypothetical protein -
  LNQ82_RS04390 (LNQ82_04390) dtd 888194..888628 (-) 435 WP_027022411.1 D-aminoacyl-tRNA deacylase -
  LNQ82_RS04395 (LNQ82_04395) - 888629..889027 (-) 399 WP_027022412.1 YccF domain-containing protein -
  LNQ82_RS04400 (LNQ82_04400) lpxB 889351..890502 (+) 1152 Protein_867 lipid-A-disaccharide synthase -
  LNQ82_RS04405 (LNQ82_04405) - 891538..891999 (-) 462 WP_027022413.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41211.10 Da        Isoelectric Point: 6.7339

>NTDB_id=689746 LNQ82_RS04380 WP_027022409.1 886040..887203(+) (dprA) [Conchiformibius steedae DSM 2580]
MNESERHAWLQLALTPHIGAESFLRLLKHYGSAAAALAAPAAQVAQIARYGKRAAAAWHTRADEARAAADDALQWEQQAA
CRLLLLGDADYPPLLGEGMTPPPLLFLRGNADLLGRAAVAIVGSRHCTPQAARIARDFAQALSEQGITVISGMASGIDAA
AHQGALQGSGSTIAVWGTGIDRVYPPAHRNLAHQIAEQGLIVSEFPLGTKPLAGNFPRRNRIIAALGVATLVVEAALESG
SLITARLAAEMGRDVMAVPGSIDNPHSKGCHKLIKDGAKLVENLDDILQECTALGGKALPRPIQAICQLPRQQKETLTLI
PTPTESHTDTPDPQHPWLAAVGYDPFHPDTLAEQLRLPAADIHAQLLEWELEGLLAALSGGRYQRIR

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=689746 LNQ82_RS04380 WP_027022409.1 886040..887203(+) (dprA) [Conchiformibius steedae DSM 2580]
ATGAACGAATCGGAACGCCATGCTTGGCTTCAGTTGGCACTTACGCCCCATATCGGCGCGGAAAGTTTTTTGCGCCTGCT
CAAACATTACGGTTCGGCAGCAGCGGCTTTGGCTGCGCCTGCGGCGCAGGTGGCGCAAATCGCCCGTTATGGCAAACGCG
CCGCCGCCGCTTGGCACACCCGCGCCGATGAAGCACGCGCCGCCGCCGATGACGCTTTACAGTGGGAACAACAAGCAGCT
TGCCGTTTGCTGCTGCTGGGCGATGCCGATTATCCGCCGCTGTTGGGCGAAGGCATGACCCCGCCGCCTTTGTTGTTTTT
GCGCGGCAATGCCGATTTATTGGGACGGGCAGCGGTAGCGATAGTCGGCAGCCGTCATTGCACGCCACAGGCTGCACGGA
TTGCACGGGATTTCGCTCAAGCATTAAGCGAACAAGGGATTACCGTAATTTCAGGCATGGCTTCGGGCATTGATGCAGCG
GCGCATCAGGGCGCGTTGCAAGGCAGCGGCAGCACGATTGCCGTGTGGGGAACAGGCATTGACCGCGTCTATCCCCCCGC
ACACCGCAATTTGGCGCACCAAATCGCCGAGCAAGGTTTGATTGTTTCAGAATTTCCTTTGGGAACAAAACCTTTAGCAG
GGAATTTTCCGCGCCGCAACCGCATTATCGCTGCATTGGGCGTAGCCACCTTGGTGGTGGAAGCTGCTTTAGAAAGCGGT
TCATTGATTACCGCACGTTTGGCGGCAGAAATGGGACGAGACGTAATGGCGGTTCCGGGTTCAATTGACAACCCGCACAG
CAAAGGTTGCCACAAGCTGATTAAAGACGGCGCAAAATTAGTGGAAAATCTTGATGATATTTTGCAAGAATGCACAGCAC
TCGGCGGAAAAGCGCTGCCGCGCCCCATTCAAGCAATCTGCCAACTGCCACGCCAGCAGAAAGAAACCTTGACCCTTATC
CCCACGCCCACCGAGTCTCACACAGACACACCCGACCCCCAACATCCTTGGCTTGCCGCCGTAGGTTACGACCCTTTCCA
CCCCGACACCCTAGCCGAACAATTGCGCCTACCCGCCGCCGATATTCATGCACAATTATTGGAATGGGAATTAGAAGGTC
TATTGGCAGCGCTCTCTGGTGGACGTTATCAACGCATCCGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(326-381)

DNA recombination-mediator protein A (DNA_processg_A)

(77-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

61.654

100

0.636
  dprA Neisseria meningitidis MC58

61.654

100

0.636
  dprA Neisseria gonorrhoeae strain FA1090

60.859

100

0.623
  dprA Neisseria gonorrhoeae MS11

60.506

100

0.618
  dprA Vibrio cholerae strain A1552

39.747

100

0.406
  dprA Vibrio campbellii strain DS40M4

39.276

100

0.393