Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   OTU45_RS06675 Genome accession   NZ_CP113114
Coordinates   1339940..1340509 (-) Length   189 a.a.
NCBI ID   WP_078791811.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334940..1345509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS06645 (OTU45_06645) - 1335254..1336189 (+) 936 WP_000401770.1 DHH family phosphoesterase -
  OTU45_RS06650 (OTU45_06650) - 1336285..1336527 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  OTU45_RS06655 (OTU45_06655) - 1336584..1336802 (-) 219 WP_000028151.1 hypothetical protein -
  OTU45_RS06660 (OTU45_06660) - 1336799..1337375 (-) 577 Protein_1316 transposase -
  OTU45_RS06665 (OTU45_06665) gdhA 1337905..1339251 (+) 1347 WP_000199568.1 NADP-specific glutamate dehydrogenase -
  OTU45_RS06670 (OTU45_06670) - 1339757..1339927 (-) 171 WP_000711943.1 hypothetical protein -
  OTU45_RS06675 (OTU45_06675) comA/nlmT 1339940..1340509 (-) 570 WP_078791811.1 ATP-binding cassette domain-containing protein Regulator
  OTU45_RS06680 (OTU45_06680) - 1340535..1341338 (-) 804 Protein_1320 IS5 family transposase -
  OTU45_RS06685 (OTU45_06685) - 1341431..1342093 (-) 663 Protein_1321 IS66 family transposase -
  OTU45_RS06690 (OTU45_06690) - 1342199..1342642 (-) 444 Protein_1322 IS66 family transposase -
  OTU45_RS06695 (OTU45_06695) - 1342615..1342923 (+) 309 Protein_1323 transposase -
  OTU45_RS06700 (OTU45_06700) tnpB 1343078..1343401 (-) 324 WP_000152337.1 IS66 family insertion sequence element accessory protein TnpB -
  OTU45_RS06705 (OTU45_06705) - 1343382..1343567 (-) 186 WP_001136124.1 hypothetical protein -
  OTU45_RS06710 (OTU45_06710) - 1343840..1344451 (-) 612 WP_000251935.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21209.60 Da        Isoelectric Point: 8.4353

>NTDB_id=689685 OTU45_RS06675 WP_078791811.1 1339940..1340509(-) (comA/nlmT) [Streptococcus pneumoniae strain NP1]
MPSRLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIVAHRLSTIKDADVIFVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=689685 OTU45_RS06675 WP_078791811.1 1339940..1340509(-) (comA/nlmT) [Streptococcus pneumoniae strain NP1]
ATACCATCAAGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TACAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATGTTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

42.391

97.354

0.413
  comA Streptococcus gordonii str. Challis substr. CH1

41.489

99.471

0.413
  comA Streptococcus mitis NCTC 12261

41.935

98.413

0.413
  comA Streptococcus mitis SK321

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.86

98.413

0.402
  comA Streptococcus pneumoniae R6

40.86

98.413

0.402
  comA Streptococcus pneumoniae TIGR4

39.785

98.413

0.392
  rcrQ Streptococcus mutans UA159

36.508

100

0.365