Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   UtA1_RS08555 Genome accession   NZ_AP018335
Coordinates   1779048..1780301 (+) Length   417 a.a.
NCBI ID   WP_096550706.1    Uniprot ID   -
Organism   Ureibacillus thermosphaericus strain A1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1774048..1785301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UtA1_RS08525 yfmH 1774108..1775400 (+) 1293 WP_096550701.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  UtA1_RS08530 ymfI 1775397..1776125 (+) 729 WP_096550702.1 elongation factor P 5-aminopentanone reductase -
  UtA1_RS08535 - 1776170..1776427 (+) 258 WP_096550703.1 DUF3243 domain-containing protein -
  UtA1_RS08540 - 1776710..1777489 (+) 780 WP_096550704.1 DUF3388 domain-containing protein -
  UtA1_RS08545 - 1777508..1778404 (+) 897 WP_232019823.1 RodZ family helix-turn-helix domain-containing protein -
  UtA1_RS08550 pgsA 1778456..1779034 (+) 579 WP_016836826.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UtA1_RS08555 cinA 1779048..1780301 (+) 1254 WP_096550706.1 competence/damage-inducible protein A Machinery gene
  UtA1_RS08560 recA 1780439..1781500 (+) 1062 WP_016836828.1 recombinase RecA Machinery gene
  UtA1_RS08565 - 1781927..1783042 (+) 1116 WP_096549683.1 IS4 family transposase -
  UtA1_RS08570 rny 1783438..1784991 (+) 1554 WP_016836829.1 ribonuclease Y -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45224.98 Da        Isoelectric Point: 5.7353

>NTDB_id=68939 UtA1_RS08555 WP_096550706.1 1779048..1780301(+) (cinA) [Ureibacillus thermosphaericus strain A1]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHSVIGDNGGRLKKAIEIAESRADLIIFSGGLGPTKDDLTKET
IAEHLNVPLVFDEKALEAIEKFFTNQGRPLTENNRKQALVLQGSEVLVNHHGLAPGMLLQKGGRTYILLPGPPKELEPMF
QFEAKPKLASLISKGGIILSHVLRFYGIGEAELETKIQHILDAQSNPTIAPLASDGEVTLRITAKADSKAEAWELINEKK
REILSIVGKYNYGVDDDTLASKAVEMLLQNKLTISAAESLTAGLFQSELAEIPGVSGTLVGGMVTYTEEAKIQQLGIPKE
LLNQYGIVSSECAASMARNVREKFGTDIGIGLTGAAGPEPHDGEPAGTIWIGIAIGEDVVTRKLQLSGLRNTNRLRTVKY
TLSYLIRLLEEKRYQKV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=68939 UtA1_RS08555 WP_096550706.1 1779048..1780301(+) (cinA) [Ureibacillus thermosphaericus strain A1]
ATGAATGCCGAAATTATTGCAGTTGGCTCTGAGTTGCTTTTAGGTCAAATTGCCAATACGAATGCAAAATTTATTTCCAG
CCAATTATCAGAGCTTGGTATTAACGTATATTATCATTCGGTGATTGGCGACAACGGAGGTAGGCTCAAAAAAGCGATTG
AAATTGCTGAATCCCGTGCAGATTTAATTATTTTTTCCGGCGGATTAGGACCAACGAAGGACGATTTAACAAAAGAAACG
ATTGCAGAGCATTTAAATGTGCCTCTCGTTTTCGATGAAAAAGCACTAGAAGCAATTGAAAAATTTTTCACTAACCAAGG
TAGACCGCTTACAGAAAATAATCGAAAACAAGCTCTAGTTCTACAGGGTAGTGAGGTATTAGTCAATCATCACGGTCTAG
CTCCAGGCATGCTGCTTCAAAAGGGAGGACGGACATACATATTATTGCCAGGTCCGCCAAAAGAATTAGAGCCGATGTTT
CAATTTGAAGCCAAACCAAAGTTAGCTTCTCTTATCAGCAAAGGAGGAATTATTCTATCTCACGTTCTTCGCTTTTATGG
CATAGGAGAAGCAGAATTGGAAACGAAGATTCAACATATTTTAGATGCCCAATCAAATCCAACGATTGCCCCGCTGGCTT
CTGATGGTGAAGTGACGTTGCGCATTACAGCGAAAGCGGATTCGAAAGCAGAAGCTTGGGAATTAATAAATGAAAAGAAA
AGGGAAATTTTATCGATTGTTGGCAAATATAACTATGGTGTTGACGATGATACGCTCGCATCAAAAGCGGTTGAAATGCT
CCTTCAAAATAAGTTAACGATTTCAGCTGCTGAAAGTTTAACAGCGGGATTATTTCAATCAGAACTAGCGGAAATCCCTG
GCGTTAGCGGCACGCTTGTTGGTGGAATGGTGACTTATACAGAAGAGGCAAAAATCCAACAGCTGGGAATTCCAAAAGAA
TTGCTCAATCAATATGGTATCGTGAGTAGCGAGTGTGCTGCGAGTATGGCAAGAAATGTTCGTGAAAAGTTTGGTACGGA
CATTGGCATTGGTTTGACAGGAGCTGCTGGCCCAGAACCACATGACGGAGAGCCGGCAGGAACAATTTGGATTGGCATCG
CGATTGGCGAGGATGTAGTGACGAGGAAACTTCAATTGTCTGGACTTCGAAATACCAACCGTTTACGTACCGTCAAATAT
ACGTTGAGTTATTTAATCCGATTGCTTGAGGAAAAAAGATATCAAAAGGTCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.195

98.321

0.513
  cinA Streptococcus pneumoniae TIGR4

45.865

95.683

0.439
  cinA Streptococcus mitis SK321

46.891

92.566

0.434
  cinA Streptococcus pneumoniae R6

45.363

95.683

0.434
  cinA Streptococcus pneumoniae Rx1

45.363

95.683

0.434
  cinA Streptococcus pneumoniae D39

45.113

95.683

0.432
  cinA Streptococcus mitis NCTC 12261

46.373

92.566

0.429
  cinA Streptococcus mutans UA159

43.781

96.403

0.422
  cinA Streptococcus suis isolate S10

38.889

94.964

0.369

Multiple sequence alignment