Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5598_RS01845 Genome accession   NZ_CP097355
Coordinates   392380..392910 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 387380..397910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS01835 (M5598_01835) galU 390327..391199 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M5598_RS01840 (M5598_01840) qstR 391457..392101 (-) 645 WP_031817222.1 LuxR C-terminal-related transcriptional regulator Regulator
  M5598_RS01845 (M5598_01845) ssb 392380..392910 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  M5598_RS01850 (M5598_01850) csrD 393151..395160 (+) 2010 WP_031817223.1 RNase E specificity factor CsrD -
  M5598_RS01855 (M5598_01855) - 395172..396617 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  M5598_RS01860 (M5598_01860) gspM 396614..397264 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  M5598_RS01865 (M5598_01865) - 397257..397586 (+) 330 WP_031817224.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=688969 M5598_RS01845 WP_005466625.1 392380..392910(+) (ssb) [Vibrio parahaemolyticus strain 16-VB00198]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=688969 M5598_RS01845 WP_005466625.1 392380..392910(+) (ssb) [Vibrio parahaemolyticus strain 16-VB00198]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGCAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCTGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483