Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   M5598_RS01840 Genome accession   NZ_CP097355
Coordinates   391457..392101 (-) Length   214 a.a.
NCBI ID   WP_031817222.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 386457..397101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS01830 (M5598_01830) uvrA 387367..390189 (-) 2823 WP_062851436.1 excinuclease ABC subunit UvrA -
  M5598_RS01835 (M5598_01835) galU 390327..391199 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M5598_RS01840 (M5598_01840) qstR 391457..392101 (-) 645 WP_031817222.1 LuxR C-terminal-related transcriptional regulator Regulator
  M5598_RS01845 (M5598_01845) ssb 392380..392910 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  M5598_RS01850 (M5598_01850) csrD 393151..395160 (+) 2010 WP_031817223.1 RNase E specificity factor CsrD -
  M5598_RS01855 (M5598_01855) - 395172..396617 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24385.22 Da        Isoelectric Point: 9.2469

>NTDB_id=688968 M5598_RS01840 WP_031817222.1 391457..392101(-) (qstR) [Vibrio parahaemolyticus strain 16-VB00198]
MRKSAYARKLFLISMEDNAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=688968 M5598_RS01840 WP_031817222.1 391457..392101(-) (qstR) [Vibrio parahaemolyticus strain 16-VB00198]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACAATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTTACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCAGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523