Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Vir3643_RS19525 Genome accession   NZ_CP097347
Coordinates   3823075..3823581 (-) Length   168 a.a.
NCBI ID   WP_373894368.1    Uniprot ID   -
Organism   Virgibacillus sp. CBA3643     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3818075..3828581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vir3643_RS19500 (Vir3643_19315) rplI 3818437..3818883 (-) 447 WP_373894363.1 50S ribosomal protein L9 -
  Vir3643_RS19505 (Vir3643_19320) - 3818880..3820856 (-) 1977 WP_373894364.1 DHH family phosphoesterase -
  Vir3643_RS19510 (Vir3643_19325) - 3820884..3821834 (-) 951 WP_373894365.1 YybS family protein -
  Vir3643_RS19515 (Vir3643_19330) - 3822022..3822510 (+) 489 WP_373894366.1 DUF1189 family protein -
  Vir3643_RS19520 (Vir3643_19335) rpsR 3822820..3823053 (-) 234 WP_373894367.1 30S ribosomal protein S18 -
  Vir3643_RS19525 (Vir3643_19340) ssbA 3823075..3823581 (-) 507 WP_373894368.1 single-stranded DNA-binding protein Machinery gene
  Vir3643_RS19530 (Vir3643_19345) rpsF 3823725..3824015 (-) 291 WP_373894369.1 30S ribosomal protein S6 -
  Vir3643_RS19535 (Vir3643_19350) ychF 3824326..3825426 (-) 1101 WP_373894370.1 redox-regulated ATPase YchF -
  Vir3643_RS19540 (Vir3643_19355) - 3825640..3825834 (-) 195 WP_373894371.1 DUF951 domain-containing protein -
  Vir3643_RS19545 (Vir3643_19360) - 3825871..3826776 (-) 906 WP_373894372.1 mechanosensitive ion channel family protein -
  Vir3643_RS19550 (Vir3643_19365) - 3826791..3827819 (-) 1029 WP_373894373.1 hypothetical protein -
  Vir3643_RS19555 (Vir3643_19370) yyaC 3827908..3828525 (+) 618 WP_373894374.1 spore protease YyaC -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18943.71 Da        Isoelectric Point: 4.7821

>NTDB_id=688870 Vir3643_RS19525 WP_373894368.1 3823075..3823581(-) (ssbA) [Virgibacillus sp. CBA3643]
MLNRVVIVGRLTKDPDLRYTANGVAVANFTVAVDRTFTNQQGEREADFIRCVTWRRQAENLANYMKKGSMVGVDGRVQTR
NFEGQDGKTVFMTEIVAESVQFLESKGSSPDRGQGQGPSGFQNRNQNQNQAPWQNQNQNQNQNQSQNQEDPFKNNGEPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=688870 Vir3643_RS19525 WP_373894368.1 3823075..3823581(-) (ssbA) [Virgibacillus sp. CBA3643]
ATGTTAAATCGTGTCGTAATAGTAGGCAGGTTAACGAAGGATCCTGATTTACGTTATACAGCCAATGGCGTGGCAGTAGC
CAATTTCACTGTTGCTGTTGACCGCACTTTTACCAATCAGCAGGGTGAACGTGAAGCCGACTTTATTCGGTGTGTCACAT
GGCGCAGACAAGCCGAGAACCTTGCTAATTACATGAAAAAAGGTAGCATGGTTGGTGTGGACGGGCGTGTTCAAACACGG
AACTTTGAAGGACAAGACGGCAAGACTGTCTTCATGACCGAAATTGTTGCAGAAAGTGTACAATTTTTAGAATCAAAAGG
ATCCTCTCCAGACAGAGGACAGGGCCAGGGACCATCAGGATTCCAAAACAGAAATCAGAACCAAAACCAGGCTCCATGGC
AGAATCAAAATCAGAACCAAAACCAAAACCAAAGTCAAAATCAAGAGGACCCGTTTAAAAATAACGGAGAGCCTATCGAT
ATATCAGACGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.577
  ssb Glaesserella parasuis strain SC1401

38.418

100

0.405
  ssb Neisseria gonorrhoeae MS11

34.444

100

0.369
  ssb Neisseria meningitidis MC58

33.889

100

0.363