Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5K26_RS22260 Genome accession   NZ_CP097342
Coordinates   4639633..4641153 (+) Length   506 a.a.
NCBI ID   WP_213377233.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain va18651     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4634633..4646153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5K26_RS22235 (M5K26_22210) ilvE 4636199..4637128 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  M5K26_RS22240 (M5K26_22215) ilvM 4637147..4637410 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  M5K26_RS22245 (M5K26_22220) ilvG 4637407..4639053 (-) 1647 WP_023304625.1 acetolactate synthase 2 catalytic subunit -
  M5K26_RS22250 (M5K26_22225) ilvX 4639056..4639106 (-) 51 WP_166792073.1 peptide IlvX -
  M5K26_RS22255 (M5K26_22230) ilvL 4639193..4639291 (-) 99 WP_001311244.1 ilv operon leader peptide -
  M5K26_RS22260 (M5K26_22235) comM 4639633..4641153 (+) 1521 WP_213377233.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5K26_RS22265 (M5K26_22240) - 4641181..4641519 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  M5K26_RS22270 (M5K26_22245) hdfR 4641638..4642459 (+) 822 WP_045339136.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54684.56 Da        Isoelectric Point: 7.5496

>NTDB_id=688828 M5K26_RS22260 WP_213377233.1 4639633..4641153(+) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain va18651]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPASPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPSPGLLRQTGIRG
ESSATVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCSGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=688828 M5K26_RS22260 WP_213377233.1 4639633..4641153(+) (comM) [Enterobacter hormaechei subsp. xiangfangensis strain va18651]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGTGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAAGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGCTTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAT
GAAGCACTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGACCGGGTGAAATCTCACTGGCGC
ACAACGGCATTTTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTAGTCGCGGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCTCGCCCGGTCTGCTGAGGCAAACCGGTATTAGGGGC
GAAAGCTCAGCAACTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTTAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCTCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437