Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5D45_RS01360 Genome accession   NZ_CP097330
Coordinates   305285..306832 (-) Length   515 a.a.
NCBI ID   WP_144198999.1    Uniprot ID   -
Organism   Cupriavidus campinensis strain G5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300285..311832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5D45_RS01325 (M5D45_01325) - 301652..301972 (-) 321 WP_092291574.1 helix-turn-helix domain-containing protein -
  M5D45_RS01330 (M5D45_01330) - 301969..302295 (-) 327 WP_250025020.1 type II toxin-antitoxin system RelE/ParE family toxin -
  M5D45_RS01335 (M5D45_01335) - 302497..303036 (-) 540 WP_144199008.1 TlpA disulfide reductase family protein -
  M5D45_RS01340 (M5D45_01340) - 303103..303576 (-) 474 WP_144199006.1 thioredoxin fold domain-containing protein -
  M5D45_RS01345 (M5D45_01345) - 303733..304335 (+) 603 WP_149136824.1 hypothetical protein -
  M5D45_RS01350 (M5D45_01350) - 304376..305035 (+) 660 WP_144199002.1 LysE family transporter -
  M5D45_RS01355 (M5D45_01355) - 305136..305288 (+) 153 WP_186296876.1 hypothetical protein -
  M5D45_RS01360 (M5D45_01360) comM 305285..306832 (-) 1548 WP_144198999.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5D45_RS01365 (M5D45_01365) - 306936..307214 (-) 279 WP_092291586.1 accessory factor UbiK family protein -
  M5D45_RS01370 (M5D45_01370) - 307760..308557 (+) 798 WP_144198995.1 TorF family putative porin -
  M5D45_RS01375 (M5D45_01375) - 308613..308951 (+) 339 WP_092291590.1 P-II family nitrogen regulator -
  M5D45_RS01380 (M5D45_01380) - 308988..310526 (+) 1539 WP_144198993.1 ammonium transporter -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54469.27 Da        Isoelectric Point: 7.7313

>NTDB_id=688614 M5D45_RS01360 WP_144198999.1 305285..306832(-) (comM) [Cupriavidus campinensis strain G5]
MSLAVLRSRALTGVEAPPVAVEIHIANGLPAFNIVGLADTEVRESRERVRAALLNSAYEFPARRITVNLAPADLPKESGR
FDLAIALGILVASGQLPGDGLDAFEFAGELSLAGDLRPVRGALVMAMGLARDNARRTAQGQPARAFIVADGNGPEAALVD
GLTVHAGATLRDVCDHLGPLPDRRLPRAEPPGLATWPDSANVGPDMCDVRGQLQARRAMEIAAAGQHSALLVGPPGTGKS
MLAQRFAGLLPPMTAAEALEAAAVLSLTPGGFQPAQWGRRPFRSPHHTASAPALVGGGGNPRPGEISLAHHGVLFLDELP
EFERRVLEVLREPLETGHITISRAAGQSDFPARFQFVAAMNPCPCGYLGHPSRPCRCTPDQIQRYQSKVSGPLLDRVDLQ
IEVPAQSQQEIFDGPPGEASAAVRARAVAARARQLGRQGMPNGELSGRAIDDHCPLAADAQALLRGAMQKLGWSARAYFR
VLKVARTIADLEDAAVLTAAHVAEAIQYRRALRAG

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=688614 M5D45_RS01360 WP_144198999.1 305285..306832(-) (comM) [Cupriavidus campinensis strain G5]
ATGAGTCTCGCCGTGCTGCGCAGCCGGGCGCTGACCGGGGTGGAGGCCCCGCCGGTGGCCGTGGAGATCCACATCGCCAA
CGGCCTGCCCGCGTTCAATATCGTCGGGCTGGCCGACACCGAGGTGCGCGAGAGCCGCGAGCGCGTGCGTGCCGCCCTGC
TCAACAGCGCCTACGAGTTCCCGGCCCGGCGCATCACCGTCAACCTCGCCCCGGCGGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGGCCATCGCGCTTGGCATCCTCGTGGCGAGTGGCCAGTTGCCGGGGGATGGGCTCGATGCCTTCGAGTTTGC
CGGCGAGCTGTCGCTGGCCGGCGACCTGCGCCCGGTGCGCGGCGCGCTGGTCATGGCGATGGGGCTGGCCCGCGACAACG
CCCGCCGCACCGCCCAGGGCCAGCCGGCGCGCGCCTTTATCGTCGCCGACGGCAACGGCCCGGAGGCCGCGCTGGTCGAT
GGCCTGACCGTCCACGCCGGCGCCACGCTGCGCGATGTCTGCGACCACCTCGGCCCCCTGCCCGACCGGCGCCTGCCGCG
CGCCGAGCCGCCGGGACTGGCTACCTGGCCGGATAGCGCCAACGTCGGCCCGGACATGTGCGACGTGCGCGGCCAGCTAC
AGGCGCGGCGTGCGATGGAGATCGCGGCGGCGGGCCAGCATTCCGCCCTGCTGGTGGGGCCGCCCGGCACCGGCAAGTCG
ATGCTCGCGCAACGATTCGCCGGGTTGCTACCGCCGATGACGGCTGCCGAGGCGCTCGAGGCCGCCGCCGTGCTGAGCCT
GACGCCAGGGGGCTTCCAGCCGGCGCAATGGGGCCGGCGCCCGTTCCGCAGCCCGCACCACACGGCCAGCGCGCCGGCGC
TGGTCGGCGGCGGCGGCAATCCGCGCCCTGGAGAGATCTCGCTGGCCCATCACGGCGTGCTGTTTCTCGACGAATTGCCA
GAGTTCGAGCGCCGCGTGCTCGAGGTCCTGCGCGAGCCGCTGGAGACCGGACACATCACCATCTCCCGCGCGGCAGGCCA
GTCGGACTTCCCCGCGCGCTTCCAGTTCGTGGCGGCGATGAACCCGTGCCCGTGCGGCTACCTCGGCCACCCGTCGCGGC
CGTGCCGCTGCACGCCGGACCAGATCCAGCGCTATCAGTCGAAGGTGTCCGGGCCCCTGCTGGACCGCGTGGACCTGCAG
ATCGAGGTGCCAGCGCAAAGCCAGCAGGAGATTTTCGATGGGCCGCCCGGCGAGGCCAGCGCGGCGGTACGCGCGCGAGC
CGTGGCGGCGCGGGCGCGGCAACTGGGCCGGCAGGGCATGCCGAATGGGGAGTTGTCCGGGCGTGCCATCGACGATCACT
GCCCGCTGGCGGCCGACGCGCAGGCGTTGCTGCGCGGGGCGATGCAGAAGCTGGGCTGGTCGGCGCGGGCGTACTTCCGG
GTGCTGAAGGTGGCCCGGACGATTGCGGATCTGGAGGATGCGGCCGTACTGACCGCCGCGCATGTGGCGGAGGCCATCCA
GTACCGGCGCGCGTTGCGGGCGGGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-410)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(417-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.468

99.223

0.511
  comM Haemophilus influenzae Rd KW20

49.515

100

0.495
  comM Vibrio campbellii strain DS40M4

49.804

99.029

0.493
  comM Glaesserella parasuis strain SC1401

48.532

99.223

0.482
  comM Legionella pneumophila str. Paris

47.137

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.137

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.52

100

0.437