Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M4D78_RS00405 Genome accession   NZ_CP097329
Coordinates   59971..60339 (+) Length   122 a.a.
NCBI ID   WP_286393581.1    Uniprot ID   -
Organism   Pseudanabaena mucicola str. Chao 1806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54971..65339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D78_RS00385 - 56723..57892 (-) 1170 WP_286393576.1 metal-dependent hydrolase -
  M4D78_RS00390 - 57880..58191 (-) 312 WP_286393578.1 hypothetical protein -
  M4D78_RS00395 - 58191..59021 (-) 831 WP_286393580.1 ATP-binding protein -
  M4D78_RS00400 - 59059..59682 (+) 624 Protein_79 ATP-binding protein -
  M4D78_RS00405 pilH 59971..60339 (+) 369 WP_286393581.1 response regulator Machinery gene
  M4D78_RS00410 - 60492..61019 (+) 528 WP_286393582.1 chemotaxis protein CheW -
  M4D78_RS00415 pilJ 61080..63431 (+) 2352 WP_286393583.1 methyl-accepting chemotaxis protein Machinery gene

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13706.00 Da        Isoelectric Point: 5.2579

>NTDB_id=688599 M4D78_RS00405 WP_286393581.1 59971..60339(+) (pilH) [Pseudanabaena mucicola str. Chao 1806]
MSTVLVVEDSVTQREMIEDLLKSIGLIVKTAGDGIEAIEQMQGSCPDIVVMDIVMPRMNGYELCRRIKTDPKTERVPVVM
CSSKGEEFDRYWGRKQGADAYIAKPFQPQELVGTVKQLLRKA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=688599 M4D78_RS00405 WP_286393581.1 59971..60339(+) (pilH) [Pseudanabaena mucicola str. Chao 1806]
ATGAGTACAGTTCTGGTGGTTGAAGATAGTGTCACACAGAGAGAAATGATTGAAGACTTACTTAAGAGTATTGGTTTAAT
CGTCAAAACAGCAGGTGACGGCATAGAAGCAATAGAGCAAATGCAAGGCAGTTGCCCAGATATCGTAGTTATGGACATTG
TCATGCCCCGCATGAATGGCTATGAACTATGTCGTCGCATCAAAACTGATCCTAAAACTGAGCGTGTTCCCGTCGTAATG
TGCTCATCTAAGGGTGAAGAATTTGATCGCTACTGGGGAAGAAAGCAAGGCGCTGATGCCTATATTGCCAAACCATTCCA
GCCTCAAGAGTTAGTTGGGACTGTCAAACAGTTACTTAGAAAAGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.074

99.18

0.705
  pilG Acinetobacter baumannii strain A118

42.982

93.443

0.402
  micA Streptococcus pneumoniae Cp1015

38.525

100

0.385
  pilL-C Synechocystis sp. PCC 6803

39.167

98.361

0.385