Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   M4D78_RS00415 Genome accession   NZ_CP097329
Coordinates   61080..63431 (+) Length   783 a.a.
NCBI ID   WP_286393583.1    Uniprot ID   -
Organism   Pseudanabaena mucicola str. Chao 1806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 56080..68431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D78_RS00385 - 56723..57892 (-) 1170 WP_286393576.1 metal-dependent hydrolase -
  M4D78_RS00390 - 57880..58191 (-) 312 WP_286393578.1 hypothetical protein -
  M4D78_RS00395 - 58191..59021 (-) 831 WP_286393580.1 ATP-binding protein -
  M4D78_RS00400 - 59059..59682 (+) 624 Protein_79 ATP-binding protein -
  M4D78_RS00405 pilH 59971..60339 (+) 369 WP_286393581.1 response regulator Machinery gene
  M4D78_RS00410 - 60492..61019 (+) 528 WP_286393582.1 chemotaxis protein CheW -
  M4D78_RS00415 pilJ 61080..63431 (+) 2352 WP_286393583.1 methyl-accepting chemotaxis protein Machinery gene
  M4D78_RS00420 - 63495..65396 (+) 1902 WP_286393584.1 Hpt domain-containing protein -
  M4D78_RS00425 - 65404..66585 (-) 1182 WP_286390445.1 hypothetical protein -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 85272.45 Da        Isoelectric Point: 4.2797

>NTDB_id=688600 M4D78_RS00415 WP_286393583.1 61080..63431(+) (pilJ) [Pseudanabaena mucicola str. Chao 1806]
MASSTQHQKEYEKASLAYMQGDYNQAAKLTQDLVQTCPSEPMYRLLHAHINLALERYQDSIVEYETVLQLTDDNSILEYA
HSGIAAAKERLDIDDRYSDNNLADLVGSSNDEFGNKQYTYNNDNSYNAQSTYMQGAWSSVDSDSHTTNDFDFDDFNSDIS
MNGSSNYSYSAETQISGSSSFDSNYKSSSSNTSGNLNSDNDVVFMDEFDDFEDLSESSFANSFSDSETTQMALDRSISDF
GSQDFATSVRSTNTTATVDPDISARRFNQTGNEAELFGLGSSNARAGSKRGVDVITDTSEQGGLFSPFDNMPLKTKNLIT
AIASGVVAIVAAGLVTNFAISSIKDNGTREQLRNTGWMMATAAAIASGSMAWGLGKRSSRMIEQATENLQSQFDSVIRGD
MTPRASIYSEDEFGRLAASFNQMIQSIVSNTNEAQRKAAEQEQAKEDLQRQVIRLLDDVEGAARGDLTVQAEVTADVLGA
VADSFNLTIQNLREIVNQVKIAARQVNESSLENEAFARSLSSDALRQAEELSVTLNSVQMMTESIQRVAESAREADQVAK
LASETAIKGGEAVERTVSGILDIRETVAETTRKVKRLGESSQEISKIVGLISQIASRTNLLALNASIEAARAGDAGRGFA
IVADEVRQLADRAAKASKEIEQIVLQIQSETSNVQQAMEIGTQQVIDGTKRAEQARQSLTDIIQVSHRIETLVLSITEDT
VKQTETSRTVSQVMQSVELTAQETSQESQRVSASLQNLVGVARSLQDSVERFRVDSGDKAGGR

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=688600 M4D78_RS00415 WP_286393583.1 61080..63431(+) (pilJ) [Pseudanabaena mucicola str. Chao 1806]
ATGGCATCAAGTACACAGCATCAAAAAGAGTATGAAAAGGCTTCCTTAGCCTACATGCAAGGAGATTACAATCAAGCTGC
AAAATTAACACAGGATCTTGTCCAAACATGCCCTAGTGAGCCTATGTATCGGTTACTTCATGCTCATATTAATCTCGCCC
TAGAACGCTATCAAGACTCAATCGTTGAATATGAAACTGTTTTGCAATTAACTGATGACAACTCAATTCTTGAATATGCT
CATAGTGGCATTGCTGCTGCCAAGGAAAGATTAGATATCGATGATAGATATAGTGACAATAACTTAGCGGATTTGGTTGG
CTCATCAAATGACGAGTTTGGAAATAAACAATATACTTATAACAATGACAATAGCTATAACGCTCAATCAACTTATATGC
AGGGGGCTTGGTCTTCAGTTGATAGTGATAGCCATACCACTAACGATTTTGACTTTGATGATTTTAATTCTGATATTTCA
ATGAATGGCTCTAGTAATTATAGCTATAGTGCCGAAACGCAAATCTCAGGCTCATCGAGCTTTGATTCTAATTATAAATC
TTCTAGCAGCAACACCTCTGGAAACTTGAACTCAGATAATGATGTTGTATTCATGGATGAGTTTGATGATTTTGAAGATC
TTAGTGAATCATCTTTTGCTAATTCCTTTAGTGATTCCGAAACAACTCAGATGGCTTTGGATCGCTCGATATCTGATTTT
GGTAGTCAAGATTTCGCAACATCAGTAAGGTCTACAAATACTACAGCAACTGTTGACCCAGATATCTCAGCACGGCGGTT
CAATCAGACTGGCAATGAAGCAGAGCTATTTGGGTTGGGATCAAGTAATGCTCGTGCAGGATCAAAACGTGGTGTGGATG
TCATTACTGATACCTCTGAGCAAGGTGGGCTATTTTCTCCATTTGACAACATGCCCTTGAAAACAAAAAACCTGATCACC
GCGATCGCATCAGGGGTGGTGGCAATAGTGGCAGCTGGTTTGGTAACTAACTTTGCAATCAGCTCGATTAAAGACAATGG
AACCCGTGAGCAGTTAAGGAATACGGGTTGGATGATGGCTACTGCAGCAGCGATCGCGAGTGGCTCGATGGCATGGGGAT
TGGGTAAACGCTCGTCGCGAATGATCGAACAAGCAACCGAAAACCTACAGTCTCAATTTGATTCGGTCATCCGTGGAGAT
ATGACTCCAAGAGCTTCTATTTATAGTGAGGATGAGTTTGGTAGACTCGCAGCTAGTTTTAACCAAATGATTCAGTCCAT
CGTGTCTAACACGAATGAAGCACAGCGCAAAGCCGCCGAACAAGAACAGGCAAAAGAAGATCTCCAACGTCAGGTAATCC
GTTTACTCGATGACGTAGAGGGAGCAGCACGTGGTGACTTGACGGTACAGGCGGAGGTAACAGCCGATGTCCTCGGTGCA
GTTGCTGATTCCTTTAATCTCACCATTCAAAACCTCCGTGAAATTGTTAACCAAGTAAAAATTGCGGCGCGTCAGGTAAA
CGAAAGCTCTCTCGAAAACGAGGCTTTTGCCCGCAGCTTATCTTCAGACGCATTGCGTCAAGCAGAAGAACTGAGCGTTA
CCTTAAATTCGGTGCAAATGATGACGGAATCGATTCAGCGAGTGGCTGAAAGCGCTCGCGAGGCGGATCAAGTCGCAAAA
CTTGCATCGGAAACCGCGATCAAGGGTGGCGAAGCGGTAGAACGCACTGTATCTGGTATTCTCGACATTCGTGAAACGGT
TGCGGAAACTACTCGGAAGGTAAAACGACTAGGTGAGTCGTCTCAAGAAATTTCTAAGATAGTTGGTTTGATTTCCCAGA
TTGCTTCGCGTACTAACTTACTCGCATTGAACGCTAGTATTGAAGCTGCAAGAGCAGGAGATGCAGGGCGTGGTTTTGCG
ATCGTTGCTGACGAAGTTCGCCAGCTAGCTGATCGCGCTGCCAAAGCGTCGAAGGAAATTGAACAAATCGTATTGCAAAT
TCAGAGTGAAACTAGTAATGTGCAACAAGCGATGGAAATTGGTACTCAACAGGTTATCGATGGTACTAAACGTGCAGAGC
AAGCTCGTCAGTCCCTAACCGACATTATCCAAGTGTCCCACCGAATTGAAACTCTGGTGCTATCCATTACCGAAGATACT
GTCAAACAAACCGAGACTTCACGCACCGTATCACAGGTTATGCAGTCAGTTGAGTTAACCGCTCAAGAAACTTCGCAAGA
ATCCCAACGAGTATCCGCCTCACTACAAAACCTTGTAGGCGTTGCCCGTAGTCTCCAAGATTCTGTGGAACGATTCCGCG
TTGACTCAGGTGATAAAGCGGGAGGTCGTTAG

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(382-428)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(558-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

42.857

100

0.487