Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M4S28_RS02900 Genome accession   NZ_CP097293
Coordinates   622768..623334 (+) Length   188 a.a.
NCBI ID   WP_017078845.1    Uniprot ID   A0A1R3FC98
Organism   Vibrio sp. J383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 617768..628334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS02890 (M4S28_02890) galU 620812..621684 (-) 873 WP_065606690.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M4S28_RS02895 (M4S28_02895) qstR 621842..622489 (-) 648 WP_029224185.1 LuxR C-terminal-related transcriptional regulator Regulator
  M4S28_RS02900 (M4S28_02900) ssb 622768..623334 (+) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  M4S28_RS02905 (M4S28_02905) csrD 623496..625511 (+) 2016 WP_061025071.1 RNase E specificity factor CsrD -
  M4S28_RS02910 (M4S28_02910) - 625514..626956 (+) 1443 WP_102498303.1 MSHA biogenesis protein MshI -
  M4S28_RS02915 (M4S28_02915) pilO 626956..627603 (+) 648 WP_249632277.1 type 4a pilus biogenesis protein PilO -
  M4S28_RS02920 (M4S28_02920) - 627596..627928 (+) 333 WP_249632278.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20757.89 Da        Isoelectric Point: 5.2358

>NTDB_id=688310 M4S28_RS02900 WP_017078845.1 622768..623334(+) (ssb) [Vibrio sp. J383]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQAQQQYSAPAQQQ
PKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=688310 M4S28_RS02900 WP_017078845.1 622768..623334(+) (ssb) [Vibrio sp. J383]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTCGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAACCACAGCAGCCACAACAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAGCAG
CCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3FC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.423

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.574
  ssb Neisseria meningitidis MC58

47.568

98.404

0.468
  ssb Neisseria gonorrhoeae MS11

47.568

98.404

0.468