Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   M4S28_RS02895 Genome accession   NZ_CP097293
Coordinates   621842..622489 (-) Length   215 a.a.
NCBI ID   WP_029224185.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 616842..627489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS02885 (M4S28_02885) uvrA 617739..620570 (-) 2832 WP_017078847.1 excinuclease ABC subunit UvrA -
  M4S28_RS02890 (M4S28_02890) galU 620812..621684 (-) 873 WP_065606690.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M4S28_RS02895 (M4S28_02895) qstR 621842..622489 (-) 648 WP_029224185.1 LuxR C-terminal-related transcriptional regulator Regulator
  M4S28_RS02900 (M4S28_02900) ssb 622768..623334 (+) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  M4S28_RS02905 (M4S28_02905) csrD 623496..625511 (+) 2016 WP_061025071.1 RNase E specificity factor CsrD -
  M4S28_RS02910 (M4S28_02910) - 625514..626956 (+) 1443 WP_102498303.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24985.12 Da        Isoelectric Point: 9.7938

>NTDB_id=688309 M4S28_RS02895 WP_029224185.1 621842..622489(-) (qstR) [Vibrio sp. J383]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDDLMLFDRKQSNRILLVDYKEAPRLINLHPNLPVMWKNHE
IILFNVPKALPTSELITFGVLKGLFYNSEEKAKIAKGLEEVINGDNWLPRKVASQLLFYYRNIVSTNTTPTNVDLTIREL
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=688309 M4S28_RS02895 WP_029224185.1 621842..622489(-) (qstR) [Vibrio sp. J383]
ATGAGAAAATCTCGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCGGACGATTTGATGTTATTTGATCGAAAGCAGAGCAACCGAA
TTTTACTGGTTGATTACAAAGAGGCGCCTCGATTAATCAACCTTCATCCAAATCTACCTGTGATGTGGAAAAATCATGAG
ATCATTCTATTCAACGTCCCCAAAGCTCTTCCCACATCGGAGTTGATTACGTTTGGCGTATTAAAAGGTCTCTTTTACAA
CTCAGAAGAGAAAGCCAAAATAGCGAAGGGACTTGAAGAAGTCATTAATGGAGACAATTGGCTACCTAGAAAAGTGGCAA
GCCAATTGTTGTTCTACTATCGAAATATCGTGAGCACCAATACCACCCCCACCAATGTCGACTTAACCATTAGAGAGCTA
CAAGTGATTCGCTGCCTTCAATCTGGCTCATCAAACACGCAAATAGCCGATGACTTGTTTATTAGCGAATTCACCGTCAA
ATCTCATCTTTATCAAATATTTCGTAAGTTAGCCGTTAAGAATAGAGTCCAAGCTATTGCATGGGCAAACCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.279

100

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

54.884

100

0.549
  qstR Vibrio cholerae strain A1552

49.533

99.535

0.493