Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M4S28_RS01205 Genome accession   NZ_CP097293
Coordinates   254452..255975 (-) Length   507 a.a.
NCBI ID   WP_249632168.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 249452..260975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS01180 (M4S28_01180) - 249490..249753 (+) 264 WP_004735759.1 YihD family protein -
  M4S28_RS01185 (M4S28_01185) ccoG 250080..251498 (+) 1419 WP_004735757.1 cytochrome c oxidase accessory protein CcoG -
  M4S28_RS01190 (M4S28_01190) - 251573..252559 (+) 987 WP_004735756.1 serine/threonine protein kinase -
  M4S28_RS01195 (M4S28_01195) - 252615..253214 (+) 600 WP_004735755.1 thiol:disulfide interchange protein DsbA/DsbL -
  M4S28_RS01200 (M4S28_01200) - 253354..254310 (+) 957 WP_102451413.1 DUF2860 domain-containing protein -
  M4S28_RS01205 (M4S28_01205) comM 254452..255975 (-) 1524 WP_249632168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M4S28_RS01210 (M4S28_01210) ilvG 256448..258094 (+) 1647 WP_004735752.1 acetolactate synthase 2 catalytic subunit -
  M4S28_RS01215 (M4S28_01215) ilvM 258096..258380 (+) 285 WP_017077311.1 acetolactate synthase 2 small subunit -
  M4S28_RS01220 (M4S28_01220) - 258393..259361 (+) 969 WP_065205707.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55574.66 Da        Isoelectric Point: 7.6532

>NTDB_id=688306 M4S28_RS01205 WP_249632168.1 254452..255975(-) (comM) [Vibrio sp. J383]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDISLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=688306 M4S28_RS01205 WP_249632168.1 254452..255975(-) (comM) [Vibrio sp. J383]
ATGGGACTCGCGATAATTCACAGCCGGGCTAGTGTGGGAGTAGAGGCACCAGAAGTGACCGTTGAAGTGCATATAAGCAA
CGGTATGCCTGGGTTTACATTGGTGGGGCTACCTGAAACGACGGTCAAGGAATCTAAAGATCGAGTCAGGAGTGCCATCA
TCAATTCTCGCTTTGAATTTCCATCGAAAAGGATCACGGTCAACCTCGCGCCTGCTGATTTACCTAAGGAGGGAGGACGT
TTCGACCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAACTTCGCTCGGTAAAGGGCGTTCTGCCTGCGACGTTAGCCGCCGATAGTGTCGAAC
GATGCTTAGTGGTTCCACACCACAATGGTGATCAGGCGGCCTTAGTCGGCAAGGGGGCCCATAAATCCGCGCAAACCTTG
CTAGAGGTTTGTGCGGATATGTGTGGCCAGGCTCAGCTTGGTTTATATCGAACCGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAGCAGCAAGGTAAGCGAGCACTGGAGATCGCCGCAGCGGGCAACCATAACC
TACTTTTTCTCGGCCCGCCTGGAACTGGGAAAACCATGTTGGCTTCTCGATTGCGCGATTTGTTGCCTGAGATGAGTGAT
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCTTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGACCTTT
CCGTTCTCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCCGGTGAGATATCTTTGG
CGCATAATGGCTTATTGTTTCTTGATGAGATGCCAGAGTTTGAGCGTAAGGTGCTTGATTCACTGCGAGAGCCGCTAGAG
TCGGGTGAAATCATTATCTCCCGTGTCGCGGGTAAGACTCGTTTTCCGGCTCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCAACAGGTTATTACGAGGGCAATCAAGCTCGAGCGAACCCGCAAATTATCCTGCGTTACCTCAACCGCTTATCTG
GGCCATTGTTGGATAGATTCGATATATCATTGGAGATCCCTCTATTGCCCAAAGGGATGTTAGCCGAAGGAGGCGATCGT
GGAGAAACCACTCAAGTCGTGAAGCAACGAGTTAAACAAGCGCGTCAGTTGATGTTATCTCGAAACCATAAGTCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCATTGCGACGCGAAGATGCGGAGTTTCTCGAGACCGCACTACATC
GATTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACTTAGAGGGTAACGAGCAG
ATTGAAAAGAAGCATTTATCGGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTTTCAGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Vibrio campbellii strain DS40M4

83.037

100

0.83
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.387

97.83

0.473
  comM Legionella pneumophila strain ERS1305867

48.387

97.83

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426