Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5X66_RS02530 Genome accession   NZ_CP097291
Coordinates   577022..577540 (+) Length   172 a.a.
NCBI ID   WP_036955024.1    Uniprot ID   -
Organism   Providencia sp. PROV188     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 572022..582540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5X66_RS02520 (M5X66_02520) - 572544..573740 (+) 1197 WP_036955033.1 amino acid aminotransferase -
  M5X66_RS02525 (M5X66_02525) uvrA 573844..576678 (-) 2835 WP_036955029.1 excinuclease ABC subunit UvrA -
  M5X66_RS02530 (M5X66_02530) ssb 577022..577540 (+) 519 WP_036955024.1 single-stranded DNA-binding protein Machinery gene
  M5X66_RS02535 (M5X66_02535) ivbL 577843..577932 (+) 90 WP_108479355.1 ilvB operon leader peptide IvbL -
  M5X66_RS02540 (M5X66_02540) ilvB 578037..579734 (+) 1698 WP_036955019.1 acetolactate synthase large subunit -
  M5X66_RS02545 (M5X66_02545) ilvN 579737..580021 (+) 285 WP_036955016.1 acetolactate synthase small subunit -
  M5X66_RS02550 (M5X66_02550) - 580067..580624 (-) 558 WP_036955464.1 XRE family transcriptional regulator -
  M5X66_RS02555 (M5X66_02555) - 580964..582160 (+) 1197 WP_108479336.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18494.51 Da        Isoelectric Point: 4.9468

>NTDB_id=688289 M5X66_RS02530 WP_036955024.1 577022..577540(+) (ssb) [Providencia sp. PROV188]
MATRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQSGGQGGWGQPQQPQAAQQFSGGGAAPARSPAPQTN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=688289 M5X66_RS02530 WP_036955024.1 577022..577540(+) (ssb) [Providencia sp. PROV188]
ATGGCCACCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTCGCTAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAAATGCGTGAAAAAACCG
AATGGCACCGTGTTGTGATTTTCGGTAAATTAGCAGAAGTTGCTGGTGAATACCTGAAAAAAGGTTCACAAGTTTATATC
GAAGGTTCATTGCAAACCCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACACCACCGAAGTTGTGGTGAATATCGG
CGGTTCAATGCAAATGCTGGGTGGTCGCGGCGGCGATGCACCATCACAAGGTCAAAGTGGCGGTCAAGGCGGTTGGGGTC
AACCACAACAGCCACAAGCAGCACAACAATTCAGTGGCGGCGGCGCAGCTCCAGCGCGTTCACCAGCGCCACAAACCAAT
GAACCACCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.472

100

0.75
  ssb Glaesserella parasuis strain SC1401

58.289

100

0.634
  ssb Neisseria meningitidis MC58

48.588

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.488
  ssb Latilactobacillus sakei subsp. sakei 23K

34.254

100

0.36