Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M4X66_RS23865 Genome accession   NZ_CP097286
Coordinates   5404252..5405745 (-) Length   497 a.a.
NCBI ID   WP_249583191.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5399252..5410745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS23845 - 5400457..5401377 (+) 921 WP_004887422.1 LysR substrate-binding domain-containing protein -
  M4X66_RS23850 - 5401559..5403535 (+) 1977 WP_122422910.1 methyl-accepting chemotaxis protein -
  M4X66_RS23855 - 5403669..5403887 (-) 219 WP_249583190.1 type II toxin-antitoxin system RelE/ParE family toxin -
  M4X66_RS23860 - 5403874..5404173 (-) 300 WP_043303383.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  M4X66_RS23865 comM 5404252..5405745 (-) 1494 WP_249583191.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M4X66_RS23870 - 5405932..5406450 (-) 519 WP_249583192.1 Bro-N domain-containing protein -
  M4X66_RS23875 - 5407457..5408650 (+) 1194 WP_249583193.1 benzoate/H(+) symporter BenE family transporter -
  M4X66_RS23880 proB 5408711..5409844 (+) 1134 WP_249583194.1 glutamate 5-kinase -
  M4X66_RS23885 - 5409847..5410743 (+) 897 WP_249583195.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52856.59 Da        Isoelectric Point: 8.0876

>NTDB_id=688275 M4X66_RS23865 WP_249583191.1 5404252..5405745(-) (comM) [Pseudomonas viridiflava strain JACO-C-5]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPTLTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLTALQDVECLGELALSGGIRPIQGVLPAALAARAAERTLIVPAVNAEEACLASGLRVIAANHL
LELVAHFNGRTPIAPYQSSGLLHQSKPYPDLSEVQGQTAAKRALVVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
YEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVARETTSLNPGPQT
GDTTASAAAIVAQARDRQNRRQGCANAFLDLPALRKHCALSSADETWLETACERLTLSLRSAHRLLKVARTLADLEQVEA
INRGHLAEALQYRPASG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=688275 M4X66_RS23865 WP_249583191.1 5404252..5405745(-) (comM) [Pseudomonas viridiflava strain JACO-C-5]
ATGTCGCTGGCCATTGTCCATAGTCGTGCCCAGGTCGGGGTTGAAGCCCCGGCGGTTACTGTCGAAGCGCATCTGGCCAA
CGGCCTGCCGACCCTGACACTGGTCGGCTTGCCCGAGGGCGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGTATCACGCTTAACCTTGCGCCTGCTGATCTGCCCAAGGATGGCGGCCGG
TTTGATCTGGCCATTGCGTTGGGTCTGCTGGCGGCCAGCGGGCAGGTGCCGTTGACGGCGTTGCAGGATGTCGAGTGCCT
GGGGGAGCTGGCGCTGTCAGGTGGCATTCGGCCGATCCAGGGTGTGCTGCCCGCAGCGTTGGCAGCGCGTGCGGCGGAGC
GAACGTTGATCGTGCCAGCGGTGAATGCCGAAGAGGCGTGTCTGGCGTCGGGTTTGCGGGTCATTGCAGCCAATCATTTG
CTCGAGCTGGTGGCGCATTTCAACGGACGCACGCCGATTGCGCCGTATCAGTCCAGCGGGTTGCTGCATCAATCCAAGCC
TTACCCGGACCTCAGCGAAGTGCAGGGGCAGACGGCTGCCAAACGTGCGTTGGTGGTCGCTGCGGCTGGCGCGCATAACC
TGTTGTTCAGTGGCCCGCCCGGCACAGGGAAGACGCTGCTGGCCAGCCGACTGCCCGGTTTGTTGCCGCCGCTGGATGAG
TACGAAGCGCTGGAAGTGGCGGCGATTCAATCGGTCGCCAGCCAGGTGCCGCTGACCAGTTGGCCGCAACGTCCTTTTCG
ACAACCGCATCACTCCGCATCGGGGCCGGCGCTGGTGGGCGGTGGCAGTCGTCCACAGCCGGGCGAGATCACATTGGCTC
ACCACGGAGTTTTGTTTCTGGATGAGTTGCCTGAGTTCGACCGGCGCGTGCTGGAGGTTTTGCGCGAGCCTCTTGAGTCC
GGCCATATCGTGATTTCCCGGGCGCGGGATCGGGTGCGGTTTCCAGCGCGCTTTCAGTTGGTCGCGGCGATGAACCCTTG
CCCATGTGGCTATCTGGGTGAACCGACTGGCCGCTGCCGCTGCTCTACAGAACAAGTGCAGCGCTACCGCAACAAACTGT
CCGGCCCGCTGCTGGATCGCATCGATCTGCACCTGACGGTTGCGCGCGAAACCACCTCGCTCAACCCCGGCCCGCAGACT
GGCGATACTACTGCCAGTGCAGCCGCCATCGTTGCACAGGCTCGCGACCGACAGAATCGGCGTCAGGGCTGCGCCAATGC
ATTCCTCGACCTTCCGGCCCTGCGCAAGCATTGCGCGCTGTCGAGTGCCGATGAGACATGGCTGGAAACCGCCTGCGAGC
GTTTGACCCTGTCACTGCGCTCGGCGCATCGGCTGCTGAAAGTGGCACGGACTCTGGCGGATCTGGAGCAGGTGGAGGCG
ATCAATCGCGGTCATCTGGCGGAGGCGTTGCAATATCGGCCTGCGAGCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Glaesserella parasuis strain SC1401

54.291

100

0.547
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

53.6

100

0.539
  comM Legionella pneumophila str. Paris

48.992

99.799

0.489
  comM Legionella pneumophila strain ERS1305867

48.992

99.799

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459