Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5C98_RS22880 Genome accession   NZ_CP097267
Coordinates   5015500..5017047 (+) Length   515 a.a.
NCBI ID   WP_272549795.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5010500..5022047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS22860 (M5C98_22860) glnK 5011194..5011532 (-) 339 WP_092744562.1 P-II family nitrogen regulator -
  M5C98_RS22865 (M5C98_22865) - 5011576..5012304 (-) 729 WP_272549790.1 TorF family putative porin -
  M5C98_RS22870 (M5C98_22870) - 5012639..5014270 (-) 1632 WP_272549792.1 SulP family inorganic anion transporter -
  M5C98_RS22875 (M5C98_22875) - 5014289..5014951 (-) 663 WP_272549794.1 carbonic anhydrase -
  M5C98_RS22880 (M5C98_22880) comM 5015500..5017047 (+) 1548 WP_272549795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5C98_RS22885 (M5C98_22885) - 5017056..5017862 (-) 807 WP_272549796.1 SDR family oxidoreductase -
  M5C98_RS22890 (M5C98_22890) - 5017970..5018890 (+) 921 WP_272549798.1 LysR family transcriptional regulator -
  M5C98_RS22895 (M5C98_22895) - 5018898..5019548 (-) 651 WP_272549799.1 TetR family transcriptional regulator -
  M5C98_RS22900 (M5C98_22900) adeC 5019589..5021040 (-) 1452 WP_272549800.1 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54008.75 Da        Isoelectric Point: 8.0639

>NTDB_id=688230 M5C98_RS22880 WP_272549795.1 5015500..5017047(+) (comM) [Acidovorax sp. NCPPB 3576]
MGLALVQSRALLGLQAPCVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNQKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDSARLAGHEFAGELSLSGELRPVRGALATSLALRSAGVAVRMVLPPGSAEEAALVPGTEVYRA
RHLLDVVQHFLPVSAHANAPAEPAGDGFVRLQASPLQSGAPEADLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSM
LAHRFAGLLPPMTVDEALESAAIASLAGRFGPERWGARPTASPHHTCSAISLVGGSSPPRPGEISLAHHGVLFLDEFPEY
ARSALEALREPLETGRITIARAAQRAEYPARFQLVAAMNPCPCGFLGSGQRTCRCTPDQVTRYQGKLSGPLLDRIDLHVE
VPALPPGELLQAPPGEPTAAVRERVVQARQRAIDRQGQPNQALQGQQIDTHLALDEAATRFLQAAATRLAWSARSTHRAL
KVARTIADLAGSAAIAPAHVAEAVQYRRVLHRSAA

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=688230 M5C98_RS22880 WP_272549795.1 5015500..5017047(+) (comM) [Acidovorax sp. NCPPB 3576]
ATGGGTCTTGCTTTGGTGCAAAGCCGGGCATTGCTGGGACTGCAGGCCCCGTGCGTGACGGTCGAAGTGCATCTGGCCAA
CGGGCTGCCCAGCTTCACGCTGGTCGGTTTGGCGGATGTGGAGGTGAAGGAGGCGCGGGAGCGGGTGCGCTCGGCGCTGC
AGAACGCCGGGCTGGAGTTTCCCCATAACCAGAAAATCACGGTCAACCTCGCGCCAGCAGATCTCCCAAAGGACTCCGGC
CGGTTCGATTTGCCGATTGCGCTGGGCATTCTCGCGGCAAGCGGGCAAATCGACAGCGCACGCCTGGCGGGCCATGAATT
CGCGGGGGAACTGTCGCTGTCCGGCGAACTGCGCCCCGTGCGCGGCGCGCTCGCCACCAGCTTGGCCCTGCGCTCGGCTG
GCGTGGCCGTGCGCATGGTGCTGCCGCCCGGCAGCGCGGAGGAAGCCGCCCTGGTGCCCGGCACCGAGGTGTACCGGGCG
CGCCACCTGCTCGACGTGGTGCAGCACTTCCTGCCCGTCTCGGCCCATGCCAATGCACCCGCCGAGCCGGCCGGGGATGG
TTTCGTGCGGCTGCAGGCGTCGCCGCTGCAATCGGGAGCGCCGGAGGCGGACCTGGCCGACGTGAAGGGTCAGGCCGCCG
CAAAGCGGGCGCTGGAGATTGCCGCTGCCGGGGGCCACGGCTTGTTATTGGTCGGCCCACCGGGATCGGGAAAATCGATG
CTGGCGCACCGCTTTGCCGGGCTGCTGCCGCCCATGACGGTGGACGAGGCCCTGGAGAGTGCGGCCATCGCGAGCCTGGC
CGGCCGCTTCGGCCCGGAAAGATGGGGTGCTCGGCCAACCGCATCGCCCCACCACACCTGCAGCGCGATTTCACTGGTTG
GCGGAAGCTCGCCTCCGCGGCCCGGCGAGATCTCGCTCGCCCATCACGGCGTCCTTTTTCTCGATGAGTTTCCGGAGTAC
GCCCGCAGTGCGCTGGAAGCCCTGCGCGAGCCGCTGGAGACAGGCCGCATCACGATAGCACGCGCGGCGCAGCGGGCGGA
ATACCCGGCGCGCTTCCAACTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTTTCTCGGCTCGGGCCAGCGCACCTGCC
GCTGCACACCCGACCAAGTCACACGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAA
GTGCCCGCGCTGCCCCCGGGCGAGTTGCTGCAGGCCCCGCCCGGCGAGCCCACGGCGGCGGTGCGCGAGCGCGTCGTGCA
GGCCCGCCAGCGGGCCATCGACCGCCAGGGCCAGCCCAACCAGGCGCTGCAGGGCCAGCAGATCGACACCCACCTGGCGC
TGGACGAGGCGGCAACGCGATTCCTGCAGGCCGCAGCGACACGCCTGGCGTGGTCGGCGCGCAGCACGCACCGCGCGCTC
AAGGTGGCCCGCACGATCGCCGACCTGGCGGGCAGCGCGGCCATCGCCCCGGCCCACGTGGCCGAGGCCGTGCAGTACCG
GCGGGTGCTGCACCGCAGCGCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.148

99.417

0.518
  comM Glaesserella parasuis strain SC1401

49.618

100

0.505
  comM Vibrio campbellii strain DS40M4

50.294

99.223

0.499
  comM Haemophilus influenzae Rd KW20

50.196

99.029

0.497
  comM Legionella pneumophila str. Paris

47.471

99.806

0.474
  comM Legionella pneumophila strain ERS1305867

47.471

99.806

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.798

100

0.439