Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MLL77_RS00530 Genome accession   NZ_CP097209
Coordinates   106155..107672 (-) Length   505 a.a.
NCBI ID   WP_102983714.1    Uniprot ID   -
Organism   Aeromonas caviae strain W3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 101155..112672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLL77_RS00500 (MLL77_00495) - 102058..102693 (-) 636 WP_282414543.1 nicotinamidase -
  MLL77_RS00505 (MLL77_00500) - 102768..103418 (+) 651 WP_103858217.1 DNA mismatch repair protein MutT -
  MLL77_RS00510 (MLL77_00505) - 103438..103743 (+) 306 WP_120416227.1 hypothetical protein -
  MLL77_RS00515 (MLL77_00510) - 103740..104213 (+) 474 WP_270804628.1 DUF523 domain-containing protein -
  MLL77_RS00520 (MLL77_00515) - 104159..105115 (-) 957 WP_270804629.1 acyltransferase -
  MLL77_RS00525 (MLL77_00520) - 105123..106022 (-) 900 WP_282414544.1 acyltransferase -
  MLL77_RS00530 (MLL77_00525) comM 106155..107672 (-) 1518 WP_102983714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MLL77_RS00535 (MLL77_00530) ilvG 108057..109703 (+) 1647 WP_282414545.1 acetolactate synthase 2 catalytic subunit -
  MLL77_RS00540 (MLL77_00535) ilvM 109700..109957 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  MLL77_RS00545 (MLL77_00540) - 109970..110914 (+) 945 WP_282414546.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54702.63 Da        Isoelectric Point: 7.4701

>NTDB_id=687815 MLL77_RS00530 WP_102983714.1 106155..107672(-) (comM) [Aeromonas caviae strain W3]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHVTI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=687815 MLL77_RS00530 WP_102983714.1 106155..107672(-) (comM) [Aeromonas caviae strain W3]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCTATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGTGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAGACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAGGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAGGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGTCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463