Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MX657_RS01955 Genome accession   NZ_CP097173
Coordinates   392711..393241 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter chuandaensis strain E20191216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 387711..398241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX657_RS01935 (MX657_01930) aphA 388035..388748 (+) 714 WP_252003082.1 acid phosphatase AphA -
  MX657_RS01940 (MX657_01935) - 388861..389277 (+) 417 WP_217480638.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MX657_RS01945 (MX657_01940) - 389280..389633 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  MX657_RS01950 (MX657_01945) uvrA 389637..392459 (-) 2823 WP_045328845.1 excinuclease ABC subunit UvrA -
  MX657_RS01955 (MX657_01950) ssb 392711..393241 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MX657_RS01960 (MX657_01955) - 393302..393583 (-) 282 WP_008503385.1 YjcB family protein -
  MX657_RS01965 (MX657_01960) - 394206..395771 (+) 1566 WP_333017590.1 EAL domain-containing protein -
  MX657_RS01970 (MX657_01965) soxS 395778..396104 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  MX657_RS01975 (MX657_01970) soxR 396203..396661 (+) 459 WP_119916568.1 redox-sensitive transcriptional activator SoxR -
  MX657_RS01980 (MX657_01975) - 396983..397654 (+) 672 WP_346807125.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=687605 MX657_RS01955 WP_006810470.1 392711..393241(+) (ssb) [Enterobacter chuandaensis strain E20191216]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=687605 MX657_RS01955 WP_006810470.1 392711..393241(+) (ssb) [Enterobacter chuandaensis strain E20191216]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCTGGCGGTGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCACAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369