Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   KK0981_RS10515 Genome accession   NZ_AP017971
Coordinates   1943429..1943842 (-) Length   137 a.a.
NCBI ID   WP_000265623.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1938429..1948842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS10490 (KK0981_40480) - 1939124..1939948 (-) 825 WP_231870455.1 membrane protein insertase YidC -
  KK0981_RS10495 (KK0981_40490) rnpA 1939923..1940294 (-) 372 WP_000739244.1 ribonuclease P protein component -
  KK0981_RS12635 - 1940311..1940442 (-) 132 WP_000768904.1 hypothetical protein -
  KK0981_RS10500 (KK0981_40500) - 1940443..1941633 (-) 1191 WP_000167769.1 acetate kinase -
  KK0981_RS10505 (KK0981_40510) comYH 1941684..1942637 (-) 954 WP_000345137.1 class I SAM-dependent methyltransferase Machinery gene
  KK0981_RS10510 - 1942698..1943292 (-) 595 Protein_1955 class I SAM-dependent methyltransferase -
  KK0981_RS10515 (KK0981_40540) comGG/cglG 1943429..1943842 (-) 414 WP_000265623.1 competence type IV pilus minor pilin ComGG Machinery gene
  KK0981_RS10520 (KK0981_40550) comGF/cglF 1943820..1944281 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  KK0981_RS10525 (KK0981_40560) comGE/cglE 1944244..1944546 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  KK0981_RS10530 (KK0981_40570) comGD/cglD 1944509..1944913 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  KK0981_RS10535 (KK0981_40580) comGC/cglC 1944906..1945232 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  KK0981_RS10540 (KK0981_40590) comGB/cglB 1945234..1946250 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  KK0981_RS10545 (KK0981_40600) comGA/cglA/cilD 1946198..1947139 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  KK0981_RS10550 (KK0981_40610) - 1947215..1947580 (-) 366 WP_000286415.1 DUF1033 family protein -
  KK0981_RS10555 (KK0981_40620) - 1947731..1948789 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 16003.46 Da        Isoelectric Point: 10.2472

>NTDB_id=68714 KK0981_RS10515 WP_000265623.1 1943429..1943842(-) (comGG/cglG) [Streptococcus pneumoniae strain KK0981]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQFFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKLKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=68714 KK0981_RS10515 WP_000265623.1 1943429..1943842(-) (comGG/cglG) [Streptococcus pneumoniae strain KK0981]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGTTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAACTCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae D39

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae R6

99.27

100

0.993

  comGG/cglG Streptococcus pneumoniae TIGR4

99.27

100

0.993

  comGG/cglG Streptococcus mitis SK321

88.321

100

0.883

  comGG/cglG Streptococcus mitis NCTC 12261

88.43

88.321

0.781

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment