Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KK0981_RS10505 Genome accession   NZ_AP017971
Coordinates   1941684..1942637 (-) Length   317 a.a.
NCBI ID   WP_000345137.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936684..1947637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS10480 (KK0981_40460) - 1937445..1938068 (-) 624 WP_000932657.1 hypothetical protein -
  KK0981_RS10485 (KK0981_40470) jag 1938119..1939105 (-) 987 WP_050201467.1 RNA-binding cell elongation regulator Jag/EloR -
  KK0981_RS10490 (KK0981_40480) - 1939124..1939948 (-) 825 WP_231870455.1 membrane protein insertase YidC -
  KK0981_RS10495 (KK0981_40490) rnpA 1939923..1940294 (-) 372 WP_000739244.1 ribonuclease P protein component -
  KK0981_RS12635 - 1940311..1940442 (-) 132 WP_000768904.1 hypothetical protein -
  KK0981_RS10500 (KK0981_40500) - 1940443..1941633 (-) 1191 WP_000167769.1 acetate kinase -
  KK0981_RS10505 (KK0981_40510) comYH 1941684..1942637 (-) 954 WP_000345137.1 class I SAM-dependent methyltransferase Machinery gene
  KK0981_RS10510 - 1942698..1943292 (-) 595 Protein_1955 class I SAM-dependent methyltransferase -
  KK0981_RS10515 (KK0981_40540) comGG/cglG 1943429..1943842 (-) 414 WP_000265623.1 competence type IV pilus minor pilin ComGG Machinery gene
  KK0981_RS10520 (KK0981_40550) comGF/cglF 1943820..1944281 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  KK0981_RS10525 (KK0981_40560) comGE/cglE 1944244..1944546 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  KK0981_RS10530 (KK0981_40570) comGD/cglD 1944509..1944913 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  KK0981_RS10535 (KK0981_40580) comGC/cglC 1944906..1945232 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  KK0981_RS10540 (KK0981_40590) comGB/cglB 1945234..1946250 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  KK0981_RS10545 (KK0981_40600) comGA/cglA/cilD 1946198..1947139 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  KK0981_RS10550 (KK0981_40610) - 1947215..1947580 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35735.93 Da        Isoelectric Point: 4.2706

>NTDB_id=68713 KK0981_RS10505 WP_000345137.1 1941684..1942637(-) (comYH) [Streptococcus pneumoniae strain KK0981]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKENNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=68713 KK0981_RS10505 WP_000345137.1 1941684..1942637(-) (comYH) [Streptococcus pneumoniae strain KK0981]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAGGAGAACAATC
AAACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment