Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M3M50_RS29685 Genome accession   NZ_CP097108
Coordinates   6659308..6660801 (+) Length   497 a.a.
NCBI ID   WP_116833738.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain SP1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6654308..6665801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M50_RS29670 (M3M50_29670) - 6655588..6656136 (+) 549 WP_249015711.1 sorbitol dehydrogenase family protein -
  M3M50_RS29675 (M3M50_29675) - 6656133..6657767 (+) 1635 WP_249015712.1 GMC family oxidoreductase -
  M3M50_RS29680 (M3M50_29680) - 6657775..6659046 (-) 1272 WP_116833737.1 HAMP domain-containing histidine kinase -
  M3M50_RS29685 (M3M50_29685) comM 6659308..6660801 (+) 1494 WP_116833738.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M3M50_RS29690 (M3M50_29690) - 6660808..6662022 (-) 1215 WP_109752680.1 aldose 1-epimerase family protein -
  M3M50_RS29695 (M3M50_29695) - 6662268..6664244 (-) 1977 WP_109752682.1 methyl-accepting chemotaxis protein -
  M3M50_RS29700 (M3M50_29700) - 6664432..6665352 (-) 921 WP_109752684.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53070.20 Da        Isoelectric Point: 8.2119

>NTDB_id=687122 M3M50_RS29685 WP_116833738.1 6659308..6660801(+) (comM) [Pseudomonas bijieensis strain SP1]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKSEP
GADTATVAEHVAEARERQQKRQGCANAFLDLPGLRRHCKLSALDETWLETACERLTLSLRAAHRLLKVARTLADLERVDR
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=687122 M3M50_RS29685 WP_116833738.1 6659308..6660801(+) (comM) [Pseudomonas bijieensis strain SP1]
ATGTCGCTCGCCATTGTCCACAGCCGCGCCCAAGTCGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTTCACTTGGCCAA
CGGCTTGCCATCGCTGACGATGGTGGGCCTGCCAGAGGCGGCGGTAAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAATTTCCCGGCGCGGCGCATCACCCTGAACCTGGCTCCGGCAGATCTGCCAAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCCTTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCAACCCTGACGCTTGACGATGTGGAATGCCT
CGGTGAGCTGGCATTGTCCGGCGCGGTGCGTCCGGTGCGCGGGGTGTTACCCGCGGCACTGGCGGCGCGCAAGGCCGGGC
GCATGCTGGTGGTGCCACGGGCCAATGCCGAGGAAGCCTGCCTGGCCTCCGGGCTGAAGGTGATCGCCGTGGATCATCTG
CTCGAAGCGGTGGCGCATTTCAACGGTCACACGCCGGTAGAGCCTTTCGTTTCCAATGGACTGCTCTCGGCCAGCAAACC
CTACCCCGACCTGAATGAAGTGCAAGGCCAGGCCGGGGCCAAGCGGGCACTGCTGATCGCCGCTGCGGGAGCTCATAACC
TGCTGTTCAGCGGGCCACCGGGCACCGGCAAGACACTGCTGGCGAGCCGTTTGCCGGGGCTGTTACCGCCGTTGGCGGAA
AGTGAGGCCCTGGAGGTCGCGGCCATCCAATCGGTGGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAACGGCCGTTTCG
CCAGCCCCACCACTCGGCTTCCGGTCCCGCGCTGGTGGGTGGCGGGTCAAAACCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGTTGTTTTTAGATGAACTGCCAGAGTTCGACCGCCGGGTGCTGGAGGTCTTGAGGGAGCCGCTGGAGTCT
GGGCACATCGTGGTTTCTCGTGCCCGTGACCGAGTCCGCTTCCCGGCGCGTTTCCAGTTGGTGGCAGCAATGAATCCCTG
CCCCTGTGGATACCTAGGCGAGCCCAGCGGCCGTTGCTCCTGTACGCCAGACATGGTGCAGCGCTACCGCAATAAGCTCT
CCGGCCCCCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAGGCCACGGCGTTGAATCCCAAAAGCGAACCC
GGTGCCGATACGGCCACCGTCGCCGAGCACGTGGCCGAAGCCCGGGAACGCCAGCAAAAACGCCAGGGCTGTGCCAACGC
ATTCCTGGATCTGCCGGGCTTGCGTCGGCATTGCAAACTATCCGCACTCGATGAAACCTGGCTGGAAACCGCTTGCGAAC
GACTGACCCTGTCGCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACGTTGGCAGACCTTGAGCGGGTGGATCGG
ATCAGTCGGGAGCACTTGGCCGAGGCGTTGCAGTATCGGCCCGCTACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469