Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M3L74_RS23270 Genome accession   NZ_CP097107
Coordinates   4680002..4681522 (+) Length   506 a.a.
NCBI ID   WP_088902910.1    Uniprot ID   -
Organism   Citrobacter freundii strain GMU8049     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4675002..4686522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3L74_RS23250 (M3L74_23250) - 4676558..4677487 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  M3L74_RS23255 (M3L74_23255) ilvM 4677505..4677768 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  M3L74_RS23260 (M3L74_23260) ilvG 4677765..4679411 (-) 1647 WP_003841174.1 acetolactate synthase 2 catalytic subunit -
  M3L74_RS23265 (M3L74_23265) ilvL 4679551..4679649 (-) 99 WP_001311244.1 ilv operon leader peptide -
  M3L74_RS23270 (M3L74_23270) comM 4680002..4681522 (+) 1521 WP_088902910.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M3L74_RS23275 (M3L74_23275) maoP 4681547..4681885 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  M3L74_RS23280 (M3L74_23280) hdfR 4681992..4682837 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55089.12 Da        Isoelectric Point: 7.4552

>NTDB_id=687090 M3L74_RS23270 WP_088902910.1 4680002..4681522(+) (comM) [Citrobacter freundii strain GMU8049]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFALSLEIPLPPPGILSQNQVKG
EDSAMVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=687090 M3L74_RS23270 WP_088902910.1 4680002..4681522(+) (comM) [Citrobacter freundii strain GMU8049]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCAGTATGCGCGTTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCATAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCCATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGCACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGCTCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGTCAGAACCAGGTAAAAGGG
GAAGATAGCGCAATGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGTGATGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTTGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATAGGGCGATAGACAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Haemophilus influenzae Rd KW20

56.751

100

0.573
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.126

100

0.423