Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   IGS56_RS03560 Genome accession   NZ_AP022846
Coordinates   707345..708352 (+) Length   335 a.a.
NCBI ID   WP_005659996.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 702345..713352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS03535 (JPHIA_06750) aspS 703028..704794 (+) 1767 WP_071162808.1 aspartate--tRNA ligase -
  IGS56_RS03540 (JPHIA_06760) nudB 704816..705289 (+) 474 WP_005659988.1 dihydroneopterin triphosphate diphosphatase -
  IGS56_RS03545 (JPHIA_06770) - 705301..706041 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IGS56_RS03550 (JPHIA_06780) ruvC 706088..706660 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  IGS56_RS03555 (JPHIA_06790) ruvA 706723..707337 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  IGS56_RS03560 (JPHIA_06800) ruvB 707345..708352 (+) 1008 WP_005659996.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IGS56_RS03565 (JPHIA_06810) - 708404..708691 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  IGS56_RS03570 (JPHIA_06820) xerD 708864..709757 (-) 894 WP_071162806.1 site-specific tyrosine recombinase XerD -
  IGS56_RS03575 (JPHIA_06830) - 709788..710954 (-) 1167 WP_071162805.1 3-phenylpropionate MFS transporter -
  IGS56_RS03580 (JPHIA_06840) proC 710954..711769 (-) 816 WP_071162804.1 pyrroline-5-carboxylate reductase -
  IGS56_RS03585 (JPHIA_06850) rdgC 711835..712743 (+) 909 WP_071162803.1 recombination-associated protein RdgC -
  IGS56_RS03590 (JPHIA_06860) ruvX 712793..713212 (-) 420 WP_005648994.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37063.37 Da        Isoelectric Point: 4.7245

>NTDB_id=68683 IGS56_RS03560 WP_005659996.1 707345..708352(+) (ruvB) [Haemophilus influenzae strain TAMBA230]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVEVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=68683 IGS56_RS03560 WP_005659996.1 707345..708352(+) (ruvB) [Haemophilus influenzae strain TAMBA230]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTGTTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGCATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTGCGTAATGGGGGA
GTAATTTCTGTAGAGGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae R6

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae D39

58.282

97.313

0.567
  ruvB Helicobacter pylori 26695

54.313

93.433

0.507
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment