Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IGS56_RS03555 Genome accession   NZ_AP022846
Coordinates   706723..707337 (+) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 701723..712337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS03530 (JPHIA_06740) - 702291..702809 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  IGS56_RS03535 (JPHIA_06750) aspS 703028..704794 (+) 1767 WP_071162808.1 aspartate--tRNA ligase -
  IGS56_RS03540 (JPHIA_06760) nudB 704816..705289 (+) 474 WP_005659988.1 dihydroneopterin triphosphate diphosphatase -
  IGS56_RS03545 (JPHIA_06770) - 705301..706041 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IGS56_RS03550 (JPHIA_06780) ruvC 706088..706660 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  IGS56_RS03555 (JPHIA_06790) ruvA 706723..707337 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  IGS56_RS03560 (JPHIA_06800) ruvB 707345..708352 (+) 1008 WP_005659996.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  IGS56_RS03565 (JPHIA_06810) - 708404..708691 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  IGS56_RS03570 (JPHIA_06820) xerD 708864..709757 (-) 894 WP_071162806.1 site-specific tyrosine recombinase XerD -
  IGS56_RS03575 (JPHIA_06830) - 709788..710954 (-) 1167 WP_071162805.1 3-phenylpropionate MFS transporter -
  IGS56_RS03580 (JPHIA_06840) proC 710954..711769 (-) 816 WP_071162804.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=68682 IGS56_RS03555 WP_005686751.1 706723..707337(+) (ruvA) [Haemophilus influenzae strain TAMBA230]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=68682 IGS56_RS03555 WP_005686751.1 706723..707337(+) (ruvA) [Haemophilus influenzae strain TAMBA230]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAGCAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment