Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   M2904_RS07970 Genome accession   NZ_CP097053
Coordinates   1610132..1611388 (-) Length   418 a.a.
NCBI ID   WP_248853068.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1605132..1616388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2904_RS07950 (M2904_07950) walK 1605314..1607140 (+) 1827 WP_248848403.1 cell wall metabolism sensor histidine kinase WalK -
  M2904_RS07955 (M2904_07955) yycH 1607137..1608441 (+) 1305 WP_248853066.1 two-component system activity regulator YycH -
  M2904_RS07960 (M2904_07960) - 1608441..1609271 (+) 831 WP_248853067.1 two-component system regulatory protein YycI -
  M2904_RS07965 (M2904_07965) - 1609289..1610095 (+) 807 WP_126762855.1 MBL fold metallo-hydrolase -
  M2904_RS07970 (M2904_07970) htrA 1610132..1611388 (-) 1257 WP_248853068.1 trypsin-like peptidase domain-containing protein Regulator
  M2904_RS07975 (M2904_07975) rlmH 1611725..1612204 (+) 480 WP_248853069.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  M2904_RS07980 (M2904_07980) - 1612414..1615173 (+) 2760 WP_248853070.1 Z1 domain-containing protein -

Sequence


Protein


Download         Length: 418 a.a.        Molecular weight: 44378.84 Da        Isoelectric Point: 4.5720

>NTDB_id=686730 M2904_RS07970 WP_248853068.1 1610132..1611388(-) (htrA) [Vagococcus lutrae strain AT15]
MKTYETSTSSPLKRFGTGLLGGLIGGAVAFGLLFNFNQDSDKTSQPLNNHGEATKVEKVAYDVENNTSKAVEKVQGAVVS
VINLQKRQEMADEYGLGGLFGLPQQPEKKSEDKQDELETSSEGSGVIYKKDGKNAYVVTNNHVVEGSDALEVLMNDGSKV
SAELVGADAYTDLAVLKISAEGVKDTAEFGDSDVLKIGEPAIAIGSPLGSDYANSVTQGIISAKNRTITNQNPETGQPTN
INAIQTDAAINPGNSGGPLINIAGQVIGINSIKIARAASGISAEGMGFSIPSNDVVDIINQLEQNGQVIRPMLGVTMIDL
AVISQEQQEKILKLPTDIKSGVIIRSVQAASPAEAAGLKQYDVIVGIDGKEIENATDLQTILYTKKVGDEIEVTYYREHH
KNTVKVSLSLDRSSLEKK

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=686730 M2904_RS07970 WP_248853068.1 1610132..1611388(-) (htrA) [Vagococcus lutrae strain AT15]
ATGAAAACATATGAAACATCTACTTCATCCCCTCTTAAACGTTTTGGAACGGGACTTTTAGGCGGACTCATTGGAGGTGC
CGTCGCGTTTGGTCTTTTATTTAATTTCAATCAAGACAGTGATAAGACATCTCAGCCATTAAACAATCATGGTGAAGCTA
CGAAAGTTGAGAAAGTGGCTTATGATGTGGAAAACAATACTTCTAAAGCCGTGGAGAAAGTACAAGGCGCTGTCGTTTCT
GTCATTAATTTACAAAAACGACAAGAAATGGCGGATGAATATGGACTTGGTGGACTATTCGGTTTACCGCAACAACCCGA
AAAGAAATCAGAAGATAAACAAGACGAGCTCGAAACTTCTAGCGAGGGCAGTGGGGTTATTTATAAAAAAGATGGTAAAA
ACGCCTATGTTGTGACTAATAATCACGTCGTGGAAGGTTCTGATGCTTTAGAAGTTTTAATGAACGACGGTTCAAAAGTG
TCCGCTGAACTAGTTGGTGCCGACGCTTATACTGATTTGGCTGTTTTAAAAATCAGTGCCGAGGGCGTAAAAGATACTGC
TGAATTTGGTGATTCTGATGTTCTAAAAATTGGAGAACCTGCGATTGCGATTGGTTCTCCACTCGGTTCTGATTATGCTA
ACTCTGTGACACAGGGTATCATTTCCGCTAAAAACCGAACGATCACGAATCAAAATCCAGAAACAGGACAACCTACGAAT
ATTAATGCCATTCAAACAGATGCGGCGATTAATCCTGGGAACTCTGGTGGGCCATTAATTAATATTGCAGGCCAAGTAAT
CGGAATTAACTCTATTAAGATTGCGCGAGCAGCGAGTGGTATCTCTGCTGAGGGTATGGGCTTTTCTATTCCAAGTAACG
ATGTTGTCGATATTATTAATCAACTAGAACAAAACGGACAAGTCATTCGCCCAATGTTAGGTGTGACGATGATTGATTTA
GCGGTCATTAGCCAAGAACAACAAGAAAAAATCTTGAAGTTACCAACAGATATTAAATCTGGCGTAATCATTCGTAGCGT
TCAGGCCGCTTCTCCTGCTGAAGCAGCAGGCTTAAAACAGTATGATGTGATTGTAGGAATTGATGGTAAAGAGATTGAAA
ATGCGACTGACCTTCAAACCATTCTATATACGAAAAAAGTCGGGGACGAGATTGAGGTAACCTACTATCGTGAGCATCAC
AAAAATACCGTGAAAGTTTCCCTTTCACTAGACCGTTCTTCTTTAGAAAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

55.163

88.038

0.486

  htrA Streptococcus gordonii str. Challis substr. CH1

48.628

95.933

0.467

  htrA Streptococcus mitis NCTC 12261

49.081

91.148

0.447

  htrA Streptococcus pneumoniae TIGR4

50.139

86.364

0.433

  htrA Streptococcus pneumoniae D39

50.139

86.364

0.433

  htrA Streptococcus pneumoniae Rx1

50.139

86.364

0.433

  htrA Streptococcus pneumoniae R6

50.139

86.364

0.433