Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   M2909_RS06020 Genome accession   NZ_CP097044
Coordinates   1211956..1213212 (-) Length   418 a.a.
NCBI ID   WP_248848402.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT33     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206956..1218212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2909_RS06000 (M2909_06000) walK 1207138..1208964 (+) 1827 WP_248848403.1 cell wall metabolism sensor histidine kinase WalK -
  M2909_RS06005 (M2909_06005) yycH 1208961..1210265 (+) 1305 WP_202585779.1 two-component system activity regulator YycH -
  M2909_RS06010 (M2909_06010) - 1210265..1211095 (+) 831 WP_202585780.1 two-component system regulatory protein YycI -
  M2909_RS06015 (M2909_06015) - 1211113..1211919 (+) 807 WP_126762855.1 MBL fold metallo-hydrolase -
  M2909_RS06020 (M2909_06020) htrA 1211956..1213212 (-) 1257 WP_248848402.1 trypsin-like peptidase domain-containing protein Regulator
  M2909_RS06025 (M2909_06025) rlmH 1213549..1214028 (+) 480 WP_248848401.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  M2909_RS06030 (M2909_06030) - 1214230..1214592 (+) 363 WP_202585108.1 DUF2620 domain-containing protein -
  M2909_RS06035 (M2909_06035) - 1214618..1215934 (+) 1317 WP_202585107.1 YhfT family protein -
  M2909_RS06040 (M2909_06040) - 1215953..1216834 (+) 882 WP_202585106.1 phosphotriesterase-related protein -
  M2909_RS06045 (M2909_06045) - 1216839..1217936 (+) 1098 WP_248848400.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44379.78 Da        Isoelectric Point: 4.4966

>NTDB_id=686556 M2909_RS06020 WP_248848402.1 1211956..1213212(-) (htrA) [Vagococcus lutrae strain AT33]
MKTYETSTSSPLKRFGTGLLGGLIGGAVAFGLLFNFNQDSDKTSQPLNNHGEATKVEKVAYDVENNTSKAVEKVQGAVVS
VINLQKRQEMADEYGLGGLFGLPQQPEKKSEDKQDELETSSEGSGVIYKKDGKNAYVVTNNHVVEGSDALEVLMNDGSKV
SAELVGADAYTDLAVLKISAEGVKDTAEFGDSDVLKIGEPAIAIGSPLGSDYANSVTQGIISAKNRTITNQNPETGQPTN
INAIQTDAAINPGNSGGPLINIAGQVIGINSIKIARAASGISAEGMGFSIPSNDVVDIINQLEQNGQVIRPMLGVTMIDL
AVISQEQQEKILKLPTDIKSGVIIRSVQAASPAEAAGLKQYDVIVGIDGKEIENATDLQTILYTKKVGDEIEVTYYREHH
KNTVKVSLSLDRSSLEKE

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=686556 M2909_RS06020 WP_248848402.1 1211956..1213212(-) (htrA) [Vagococcus lutrae strain AT33]
ATGAAAACATATGAAACATCTACTTCATCCCCTCTTAAACGTTTTGGAACGGGACTTTTAGGCGGACTCATTGGAGGTGC
CGTCGCGTTTGGTCTTTTATTTAATTTCAATCAAGACAGTGATAAGACATCTCAGCCATTAAACAATCATGGTGAAGCTA
CGAAAGTTGAGAAAGTGGCTTATGATGTGGAAAACAATACTTCTAAAGCCGTGGAGAAAGTACAAGGCGCTGTCGTTTCT
GTTATTAATTTACAAAAACGACAAGAAATGGCGGATGAATATGGACTTGGTGGACTATTCGGTTTACCGCAACAACCCGA
AAAGAAATCAGAAGATAAACAAGACGAGCTCGAAACTTCTAGCGAGGGCAGTGGGGTTATTTATAAAAAAGATGGTAAAA
ACGCCTATGTTGTGACTAATAATCACGTCGTGGAAGGTTCTGATGCTTTAGAAGTTTTAATGAACGACGGTTCAAAAGTG
TCCGCTGAACTAGTTGGTGCCGACGCTTATACTGATTTGGCTGTTTTAAAAATCAGTGCCGAGGGCGTAAAAGATACTGC
TGAATTTGGTGATTCTGATGTTCTAAAAATTGGTGAACCTGCGATTGCGATTGGTTCTCCACTCGGTTCTGATTATGCTA
ACTCTGTGACACAGGGTATCATTTCCGCTAAAAACCGAACAATCACGAATCAAAATCCAGAAACAGGACAACCTACGAAT
ATTAATGCCATTCAAACAGATGCGGCGATTAATCCTGGGAACTCTGGTGGGCCATTAATTAATATTGCGGGCCAAGTAAT
CGGAATTAACTCCATTAAGATTGCACGAGCAGCGAGTGGTATCTCTGCTGAGGGTATGGGCTTCTCTATTCCAAGTAATG
ATGTTGTCGATATTATTAATCAACTAGAACAAAACGGACAAGTCATTCGCCCAATGTTAGGTGTGACGATGATTGATTTA
GCGGTCATTAGCCAAGAACAACAAGAAAAAATCTTAAAATTGCCAACAGATATTAAATCTGGTGTAATCATTCGTAGCGT
TCAGGCCGCTTCTCCTGCTGAAGCAGCAGGCTTAAAACAGTATGATGTGATTGTAGGAATTGATGGTAAAGAGATTGAAA
ATGCGACTGACCTTCAAACCATTCTATATACGAAAAAAGTCGGGGACGAGATTGAGGTAACCTACTATCGTGAGCATCAC
AAAAATACCGTGAAAGTTTCCCTTTCACTAGACCGTTCTTCTTTAGAAAAAGAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(312-408)

Peptidase family M50 (Peptidase_M50)

(79-408)

Trypsin-like peptidase domain (Trypsin_2)

(123-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

55.163

88.038

0.486
  htrA Streptococcus gordonii str. Challis substr. CH1

48.13

95.933

0.462
  htrA Streptococcus mitis NCTC 12261

49.081

91.148

0.447
  htrA Streptococcus pneumoniae TIGR4

50.139

86.364

0.433
  htrA Streptococcus pneumoniae D39

50.139

86.364

0.433
  htrA Streptococcus pneumoniae Rx1

50.139

86.364

0.433
  htrA Streptococcus pneumoniae R6

50.139

86.364

0.433