Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CCX78_RS07190 Genome accession   NZ_AP017931
Coordinates   1396120..1397457 (-) Length   445 a.a.
NCBI ID   WP_011374200.1    Uniprot ID   Q38YD5
Organism   Latilactobacillus sakei strain LK-145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391120..1402457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS07175 (LASAK_01438) secA 1392165..1394528 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  CCX78_RS07180 (LASAK_01439) hpf 1394777..1395322 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CCX78_RS10210 (LASAK_01440) comFC 1395449..1395877 (-) 429 WP_148664867.1 ComF family protein Machinery gene
  CCX78_RS07190 (LASAK_01441) comFA 1396120..1397457 (-) 1338 WP_011374200.1 DEAD/DEAH box helicase Machinery gene
  CCX78_RS07195 (LASAK_01442) - 1397519..1398184 (+) 666 WP_011374199.1 YigZ family protein -
  CCX78_RS07200 (LASAK_01443) - 1398211..1399299 (-) 1089 WP_041821010.1 glycosyltransferase family 4 protein -
  CCX78_RS07205 (LASAK_01444) rny 1399455..1401020 (-) 1566 WP_011374197.1 ribonuclease Y -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50436.85 Da        Isoelectric Point: 9.9066

>NTDB_id=68602 CCX78_RS07190 WP_011374200.1 1396120..1397457(-) (comFA) [Latilactobacillus sakei strain LK-145]
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQVVPPQTCLPDGRHYCAQCLLFGRLVEGDWL
YTVPECHLFENNIPKLTWEGQLTPHQEKAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLERDCQTYLKTQQILLFVPQVR
LLQPVANRLSTLLPAVRIETLHANDPDQIKKITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYAQNPVHFYYQDYTRAIKGACRQIKTQNQRGRRLQSTV

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=68602 CCX78_RS07190 WP_011374200.1 1396120..1397457(-) (comFA) [Latilactobacillus sakei strain LK-145]
ATGGGACAACAAGTAATTGCCTGTGGTCGCCAGTTTACGGCGGCCCAGTTAGCCGATACGCAAAATAATAACTATAGTTT
ACCACAGATTAAGCGGCGACCTGCGTTTTTACGGGTCAAGCACCGCTTAGTCTGCCAACGTTGTCAGCAAGTGGTGCCGC
CGCAAACCTGCTTACCAGATGGGCGCCATTATTGCGCGCAATGTTTGTTATTTGGTCGTTTGGTAGAGGGCGATTGGTTA
TACACGGTACCGGAGTGTCATTTATTCGAAAATAACATACCAAAATTGACGTGGGAGGGGCAATTAACACCGCATCAGGA
AAAAGCTGCCCAAGCGGTGGTTGAGGTGGTTCAAACACAAAAACGGCACGTATTAACGGCCGTGACCGGTGCAGGGAAGA
CTGAGATGCTTTTTCAAGGAATTTTAGTTGCGCTTCAAAAGGGTCAGCGGGTATGTCTGGCAGCGCCTAGAGTCGCCGTT
TGCTTGGAACTTTATCCGCGCCTGCAAGCCGCCTTTGCAACGACTAGTATCATGTTGATGCACGGTGAGCAAACTGAGCC
CTATCGCTATACGCAGTTAGTGATTTGCACGACGCATCAGTTGCTAAAGTTTTATCACGCTTTTGACACGGTAATCGTTG
ATGAAGTCGATGCTTTTCCTTTTGTTGATAATCCCGTTTTAGCCACGGCAGTTGAACAAGCCTGCAAGCCCCAATGTGCT
TTATTATATTTAACGGCGACTCCGACCCCCGCTATTAAACGGGCAATTGCTGCTAAACAAATGACGGTTAGCGAATTACC
GCTCCGCTTTCATGGTCATCTATTACCAGAACCACAGCGGCACGTCGCTTTTAATTGGCGGGCCCAATTAAAAAAAGGTC
GGTTACCTAAACGACTTGAACGGGATTGCCAGACTTACTTAAAAACGCAACAGATTTTGTTATTCGTGCCGCAAGTGCGG
TTATTGCAACCAGTTGCCAATCGGTTATCAACCTTATTGCCGGCGGTCAGGATTGAAACATTGCATGCTAACGATCCGGA
TCAGATCAAAAAGATTACGGCGTTTAGAGCACAACAAATTCAGCTAATGGTGACGACCACCATTTTAGAACGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACATATGGTGTTTAACGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCGGGACGGCATAAAGATTACGCCCAAAATCCGGTTCATTTTTATTATCAAGACTATACGCGGGCGATCAAAGGCGC
TTGTCGGCAAATTAAGACCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(306-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comFA/cflA Streptococcus pneumoniae TIGR4

39.211

96.854

0.38
  comFA/cflA Streptococcus mitis SK321

38.621

97.753

0.378
  comFA/cflA Streptococcus pneumoniae R6

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae Rx1

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae D39

38.979

96.854

0.378
  comFA/cflA Streptococcus mitis NCTC 12261

38.515

96.854

0.373
  comFA Bacillus subtilis subsp. subtilis str. 168

39.268

92.135

0.362

Multiple sequence alignment