Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CCX78_RS10210 Genome accession   NZ_AP017931
Coordinates   1395449..1395877 (-) Length   142 a.a.
NCBI ID   WP_148664867.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390449..1400877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS07175 (LASAK_01438) secA 1392165..1394528 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  CCX78_RS07180 (LASAK_01439) hpf 1394777..1395322 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CCX78_RS10210 (LASAK_01440) comFC 1395449..1395877 (-) 429 WP_148664867.1 ComF family protein Machinery gene
  CCX78_RS07190 (LASAK_01441) comFA 1396120..1397457 (-) 1338 WP_011374200.1 DEAD/DEAH box helicase Machinery gene
  CCX78_RS07195 (LASAK_01442) - 1397519..1398184 (+) 666 WP_011374199.1 YigZ family protein -
  CCX78_RS07200 (LASAK_01443) - 1398211..1399299 (-) 1089 WP_041821010.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16670.11 Da        Isoelectric Point: 9.8198

>NTDB_id=68612 CCX78_RS10210 WP_148664867.1 1395449..1395877(-) (comFC) [Latilactobacillus sakei strain LK-145]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKPNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELIPQELPYKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=68612 CCX78_RS10210 WP_148664867.1 1395449..1395877(-) (comFC) [Latilactobacillus sakei strain LK-145]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTGTTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAACCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCACAATTTTTTGAATTAATACCGCAAGAATTACCGTATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comFC Lactococcus lactis subsp. cremoris KW2

37.241

100

0.38

Multiple sequence alignment