Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0220_RS08380 Genome accession   NZ_CP096973
Coordinates   1771299..1772807 (-) Length   502 a.a.
NCBI ID   WP_264019127.1    Uniprot ID   A0AA46TT90
Organism   Halomonas qinghailakensis strain ZZQ-149     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1766299..1777807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0220_RS08355 (M0220_08330) thiS 1766640..1766861 (-) 222 WP_030071417.1 sulfur carrier protein ThiS -
  M0220_RS08360 (M0220_08335) - 1767079..1767456 (+) 378 WP_030071411.1 DUF423 domain-containing protein -
  M0220_RS08365 (M0220_08340) - 1767453..1767887 (-) 435 WP_264019126.1 PaaI family thioesterase -
  M0220_RS08370 (M0220_08345) - 1767955..1770127 (-) 2173 Protein_1620 malate synthase G -
  M0220_RS08375 (M0220_08350) - 1770334..1771302 (+) 969 WP_030071404.1 alpha/beta hydrolase -
  M0220_RS08380 (M0220_08355) comM 1771299..1772807 (-) 1509 WP_264019127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M0220_RS08385 (M0220_08360) - 1772894..1773784 (-) 891 WP_035536387.1 ABC transporter substrate-binding protein -
  M0220_RS08390 (M0220_08365) - 1774296..1775627 (+) 1332 WP_264019128.1 tyrosine-type recombinase/integrase -
  M0220_RS08395 (M0220_08370) - 1775766..1776014 (-) 249 WP_264019129.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  M0220_RS08400 (M0220_08375) - 1776383..1776970 (-) 588 WP_264019130.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53628.86 Da        Isoelectric Point: 7.7353

>NTDB_id=685817 M0220_RS08380 WP_264019127.1 1771299..1772807(-) (comM) [Halomonas qinghailakensis strain ZZQ-149]
MTLAIVATRAGVGLEAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALINAGFDFPNTKRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVDALEGMECAGELALDGKLRAVPGVLPFALATRRANKVLIIPRACADEAALAGDLPVLPADT
LWQVVAHLLGQEKIPPHQLSASVRSTAPMADLADVRGQHQARRALEVAAAGGHNLLLAGPPGTGKTMLASRLPGILPPLS
EDDALQVAAVRSVCGLPLEADWGQRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRNVLEVLRQPLE
TGEIHLSRASHERRYPARFQLVAAMNPCPCGHLGDPRQRCQCSASQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAQT
QGEPSSAVRDRVMAARERQMARGALNSQLSGKALEAACALSDEERMWLAEVLEKLKLSARAYHRVLRVALTLADLQGEPK
PSQPHFIEAIGYRQLDRLLRGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=685817 M0220_RS08380 WP_264019127.1 1771299..1772807(-) (comM) [Halomonas qinghailakensis strain ZZQ-149]
ATGACACTAGCCATTGTGGCCACACGCGCCGGCGTGGGGCTGGAAGCACCCGCCGTGCATGTTGAGGTCCATTTAGCTAA
TGGGTTGCCTGGGCTAACACTGGTGGGTCTGCCAGAAACCGCCGTCAAAGAGAGCCGCGAGCGGGTGCGCAGCGCGCTCA
TCAATGCTGGGTTTGATTTCCCCAACACCAAACGTATTACCCTCAACCTTGCACCCGCCGATCTGCCCAAAGAGGGCGGT
CGTTTTGATTTACCGATAGCGCTCGGCATTCTGGCCGCCTCCGGCCAAATCCCAGTGGATGCGCTAGAAGGCATGGAGTG
CGCTGGTGAACTGGCGCTGGATGGCAAACTACGCGCCGTGCCTGGCGTACTGCCTTTTGCACTTGCCACACGGCGCGCCA
ATAAAGTACTGATTATTCCCCGCGCTTGCGCTGATGAAGCTGCTCTAGCGGGTGATTTGCCCGTTCTACCAGCCGACACC
CTTTGGCAGGTCGTTGCTCATTTGCTAGGGCAAGAGAAAATCCCGCCCCACCAACTGTCTGCCTCGGTGAGATCCACGGC
TCCCATGGCCGACTTAGCCGACGTGCGCGGCCAGCACCAAGCGCGCCGCGCGTTGGAAGTAGCGGCCGCTGGTGGCCATA
ATTTGCTGTTAGCAGGGCCACCGGGCACCGGTAAGACCATGCTCGCTAGTCGCTTACCGGGCATTCTGCCACCGCTTTCC
GAAGACGATGCGCTGCAGGTGGCTGCCGTGCGTTCGGTATGTGGTCTGCCCCTGGAAGCAGACTGGGGCCAGCGGCCATT
TCGCCAACCCCACCACAGCGCCAGCGCCGCCGCGTTAGTGGGAGGAGGCTCAAAGCCCAAACCTGGGGAAATCTCCCTTG
CTCACCACGGCGTGCTGTTTTTAGACGAGCTGCCGGAATTTTCCCGCAACGTATTAGAAGTTTTACGGCAGCCACTGGAA
ACGGGGGAAATACATTTATCTCGCGCCAGTCACGAGCGCCGTTACCCAGCACGGTTTCAGCTTGTAGCCGCCATGAACCC
CTGCCCCTGCGGCCATTTGGGTGACCCACGCCAGCGCTGTCAGTGCAGCGCCAGCCAGATTCAACGCTACCAGGCACGGC
TTTCTGGCCCGCTATTAGACCGCATTGACCTGCAAGTAGAAGTGCCCGCTCTACCACCCGAACAGCTTACTGCCCAAACT
CAGGGTGAACCTTCCAGTGCGGTGCGCGATCGGGTGATGGCCGCCCGTGAGCGGCAGATGGCGCGAGGCGCACTCAACAG
CCAACTAAGTGGCAAAGCCCTAGAAGCCGCCTGCGCGCTAAGCGATGAAGAGCGCATGTGGTTAGCGGAGGTACTGGAAA
AACTTAAGCTCTCTGCCCGAGCTTACCATCGCGTGCTGCGGGTCGCGCTCACCCTGGCTGACCTACAAGGCGAACCCAAG
CCCAGCCAGCCGCACTTTATCGAAGCCATCGGCTATCGGCAGCTAGACAGGCTGTTAAGGGGAGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.213

100

0.568
  comM Glaesserella parasuis strain SC1401

55.03

100

0.556
  comM Vibrio cholerae strain A1552

55.268

100

0.554
  comM Vibrio campbellii strain DS40M4

54.871

100

0.55
  comM Legionella pneumophila str. Paris

51.896

99.801

0.518
  comM Legionella pneumophila strain ERS1305867

51.896

99.801

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.284

99.004

0.468