Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M2M22_RS13110 Genome accession   NZ_CP096923
Coordinates   2749768..2750292 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain NY0401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2744768..2755292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M22_RS13090 (M2M22_13085) aphA 2745092..2745805 (+) 714 WP_063147065.1 acid phosphatase AphA -
  M2M22_RS13095 (M2M22_13090) - 2745918..2746334 (+) 417 WP_023299095.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M2M22_RS13100 (M2M22_13095) - 2746337..2746690 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  M2M22_RS13105 (M2M22_13100) uvrA 2746694..2749516 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  M2M22_RS13110 (M2M22_13105) ssb 2749768..2750292 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M2M22_RS13115 (M2M22_13110) - 2750353..2750634 (-) 282 WP_022646751.1 YjcB family protein -
  M2M22_RS13120 (M2M22_13115) - 2751076..2752476 (+) 1401 WP_063147066.1 sensor domain-containing diguanylate cyclase -
  M2M22_RS13125 (M2M22_13120) - 2752742..2754307 (+) 1566 WP_063147067.1 EAL domain-containing protein -
  M2M22_RS13130 (M2M22_13125) soxS 2754314..2754640 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  M2M22_RS13135 (M2M22_13130) soxR 2754739..2755197 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=685230 M2M22_RS13110 WP_003860284.1 2749768..2750292(+) (ssb) [Enterobacter hormaechei strain NY0401]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=685230 M2M22_RS13110 WP_003860284.1 2749768..2750292(+) (ssb) [Enterobacter hormaechei strain NY0401]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCACAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374