Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M2J84_RS00675 Genome accession   NZ_CP096918
Coordinates   149273..150811 (-) Length   512 a.a.
NCBI ID   WP_270150559.1    Uniprot ID   -
Organism   Comamonas aquatica strain NY8661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144273..155811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J84_RS00650 (M2J84_00650) - 145021..145737 (-) 717 WP_270150533.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  M2J84_RS00655 (M2J84_00655) - 145734..146198 (-) 465 WP_270150538.1 DUF4878 domain-containing protein -
  M2J84_RS00660 (M2J84_00660) - 146354..146953 (-) 600 WP_270150543.1 glutathione S-transferase family protein -
  M2J84_RS00665 (M2J84_00665) - 147000..148217 (-) 1218 WP_270150549.1 YbfB/YjiJ family MFS transporter -
  M2J84_RS00670 (M2J84_00670) - 148294..149211 (+) 918 WP_270150554.1 LysR family transcriptional regulator -
  M2J84_RS00675 (M2J84_00675) comM 149273..150811 (-) 1539 WP_270150559.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M2J84_RS00680 (M2J84_00680) - 151018..151356 (+) 339 WP_042411906.1 P-II family nitrogen regulator -
  M2J84_RS00685 (M2J84_00685) - 151383..152747 (+) 1365 WP_081770788.1 ammonium transporter -
  M2J84_RS00690 (M2J84_00690) glcE 153010..154128 (+) 1119 WP_270150576.1 glycolate oxidase subunit GlcE -
  M2J84_RS00695 (M2J84_00695) glcF 154184..155425 (+) 1242 WP_270150580.1 glycolate oxidase subunit GlcF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54118.01 Da        Isoelectric Point: 8.0545

>NTDB_id=685145 M2J84_RS00675 WP_270150559.1 149273..150811(-) (comM) [Comamonas aquatica strain NY8661]
MSLACVQSRALLGLQAPAVTVEVHLANGLPSLTLVGLADVEVKEARERVRCAIVNSGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLLGWEFAGELSLSGELRPVRGALATSLALPWGQAPARLVLPLDSAAEAACAPQAEVYGA
AHLLDVVAQLLPPGTTPHDRASAGWQRMPPPPRQAPRALLDLAEVKGQVQAKRALEIAAAGSHAVLLVGPPGSGKSMLAH
RFAGLLPPMTEQEAVESAAIASLCGRFQATQWGQRRTAHPHHTASAVALVGGGSPPKPGEISLAHHGTLFLDEFPEFSRS
ALEALREPLETGCITIARATHSAEFPARFQLIAAMNPCPCGFWGSAQRSCRCTPDQVARYQGKLSGPLLDRIDLHVEVHS
LPAEQLLASTEGERSQAVQARVAQARARALQRQGCSNQLLQGDALEQHLQLEDSAAALVRKAADRLGWSARATHRALRVA
RTIADLAGSPHIASAHVAEAMQYRRTLVPASP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=685145 M2J84_RS00675 WP_270150559.1 149273..150811(-) (comM) [Comamonas aquatica strain NY8661]
ATGAGCCTGGCTTGCGTCCAAAGTCGTGCCCTTTTGGGGCTGCAAGCGCCCGCCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCCTGACCCTGGTGGGGCTGGCCGACGTGGAGGTCAAGGAAGCCCGCGAGCGCGTGCGCTGCGCCATCG
TCAACAGCGGCCTGGAATTTCCGACCAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTGGCCGCCAGCGGGCAGATCGATGCGGCGCGGCTGCTCGGCTGGGAGTT
CGCGGGCGAGCTGTCCTTGTCGGGCGAGCTGCGCCCGGTGCGCGGGGCCCTGGCCACCAGCCTGGCCCTGCCCTGGGGCC
AGGCCCCGGCACGCCTGGTACTGCCGCTGGACAGCGCCGCCGAGGCAGCCTGCGCCCCGCAGGCCGAGGTCTATGGCGCC
GCCCACCTGCTGGATGTGGTGGCGCAGCTGTTGCCCCCGGGTACCACCCCGCACGACCGTGCCAGCGCGGGCTGGCAGCG
CATGCCGCCACCACCGCGCCAGGCGCCCCGGGCCCTGCTGGACCTGGCCGAGGTCAAGGGCCAGGTCCAGGCCAAGCGCG
CCCTGGAGATTGCCGCCGCCGGCAGCCATGCCGTGCTGCTGGTCGGCCCGCCCGGCTCGGGCAAGTCCATGCTGGCCCAC
CGGTTTGCCGGCCTGCTGCCGCCCATGACCGAGCAGGAGGCCGTCGAAAGCGCGGCCATCGCCAGCCTGTGCGGGCGCTT
CCAGGCCACGCAGTGGGGCCAGCGCCGCACCGCCCACCCGCACCACACGGCCAGCGCCGTGGCCCTGGTCGGCGGGGGCT
CGCCGCCCAAACCCGGCGAGATCTCTCTGGCCCACCACGGCACGCTGTTCCTCGATGAATTCCCCGAGTTCAGCCGCAGC
GCGCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGCTGCATCACCATCGCCCGCGCCACGCACAGCGCGGAGTTCCCGGC
GCGCTTTCAGCTGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTCTGGGGCAGTGCCCAGCGCAGCTGCCGCTGCACGC
CCGACCAGGTGGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTCGAGGTGCACAGC
CTGCCGGCCGAACAGCTGCTGGCCAGCACCGAGGGCGAACGCAGCCAGGCCGTGCAGGCCCGCGTGGCCCAGGCGCGGGC
GCGGGCCTTGCAGCGCCAGGGCTGCAGCAACCAGCTGCTGCAGGGCGACGCGTTGGAGCAGCACCTGCAGCTGGAGGACA
GCGCCGCCGCCCTGGTGCGCAAGGCTGCCGACCGCCTGGGCTGGTCGGCCCGTGCCACCCACCGCGCGCTGCGCGTGGCG
CGCACCATCGCCGACCTGGCCGGCAGCCCCCACATCGCCAGCGCCCACGTGGCCGAGGCCATGCAGTACCGCCGCACCCT
GGTGCCCGCCAGCCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-129)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.186

98.828

0.506
  comM Vibrio campbellii strain DS40M4

50.098

99.805

0.5
  comM Haemophilus influenzae Rd KW20

49.119

99.805

0.49
  comM Legionella pneumophila strain ERS1305867

48.728

99.805

0.486
  comM Legionella pneumophila str. Paris

48.728

99.805

0.486
  comM Glaesserella parasuis strain SC1401

49.112

99.023

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.27

99.805

0.422