Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M2R49_RS23135 Genome accession   NZ_CP096905
Coordinates   4821329..4822849 (+) Length   506 a.a.
NCBI ID   WP_054177009.1    Uniprot ID   -
Organism   Citrobacter amalonaticus strain RSHH22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4816329..4827849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2R49_RS23110 (M2R49_23090) ilvE 4817884..4818813 (-) 930 WP_042998773.1 branched-chain-amino-acid transaminase -
  M2R49_RS23115 (M2R49_23095) ilvM 4818832..4819095 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  M2R49_RS23120 (M2R49_23100) ilvG 4819092..4820738 (-) 1647 WP_054177008.1 acetolactate synthase 2 catalytic subunit -
  M2R49_RS23125 (M2R49_23105) ilvX 4820741..4820791 (-) 51 WP_193762813.1 peptide IlvX -
  M2R49_RS23130 (M2R49_23110) ilvL 4820878..4820976 (-) 99 WP_001311244.1 ilv operon leader peptide -
  M2R49_RS23135 (M2R49_23115) comM 4821329..4822849 (+) 1521 WP_054177009.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M2R49_RS23140 (M2R49_23120) maoP 4822875..4823213 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  M2R49_RS23145 (M2R49_23125) hdfR 4823332..4824165 (+) 834 WP_042998770.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55072.90 Da        Isoelectric Point: 7.1829

>NTDB_id=685022 M2R49_RS23135 WP_054177009.1 4821329..4822849(+) (comM) [Citrobacter amalonaticus strain RSHH22]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRVGRGIIVAKENEDEVGLIEGEGCLVADHL
QAVCAFLEGKYDLSHPVVNNDTISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ENSFTVKHRVIAARERQHKRQGKLNAHLQNREIREHCPLADEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAHLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=685022 M2R49_RS23135 WP_054177009.1 4821329..4822849(+) (comM) [Citrobacter amalonaticus strain RSHH22]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTGTCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCGATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCTGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCCTCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGCGCAACCGAGGCGATACGGGTGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGACGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGATCATCTA
CAAGCTGTCTGTGCCTTCCTGGAAGGAAAATATGACCTTAGCCATCCTGTTGTTAACAACGACACTATCAGTGTGTCATC
AGATGATCTCAGCGATATTATTGGTCAGGAGCAAGGGAAGCGCAGCCTTGAGATCACCGCCGCAGGTGGCCACAATCTGC
TATTAGTTGGCCCACCGGGTACGGGGAAAACGATGCTTGCCAGCCGTCTTAATGGCCTATTGCCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCTATCCTCAGTCTGGTTAACTCGACCAGCGTGCAAAAGTTATGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCCATGGTTGGTGGCGGAACTATCCCCGCACCAGGCGAAATTTCTTTGGCAC
ACAACGGCATACTGTTTCTTGATGAGCTGCCTGAGTTTGAACGACGCACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTAGCGGCAATGAATCCCAG
TCCCACCGGTCATTATCAGGGCAACCATAACCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTTGATCTTTCTCTTGAGATCCCTCTCCCACCGCCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAACAGCTTTACGGTTAAACATCGGGTCATTGCTGCGCGGGAACGTCAGCATAAACGCCAGGGCAAATTGAATGCACA
CCTGCAAAACAGGGAGATACGTGAACACTGCCCATTAGCAGATGAAGACGCGCAGTGGCTTGAAGAGACCCTCATCCATC
TTGGATTGTCTATACGCGCCTGGCAGCGGTTATTAAAGGTATCGAGGACTATTGCCGATCTCGCGCAAGCCGAACACATT
TCACGAAGACACTTGCAGGAAGCGGTCAGTTACCGGGCGATAGATCGACTGCTTGCTCACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Haemophilus influenzae Rd KW20

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.416

99.802

0.583
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

99.407

0.427